Browse Element(s) Details


OsAffx.18698.1.S1_at

Description tigr:9639.m00520
TID=OsAffx.18698.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0596011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05920OsAffx.10637.3.S1_s_at10/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.4.S1_s_at9/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.32056.1.S1_x_at8/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.1.S1_s_at5/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.32056.1.S1_at3/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05930Os.12795.1.S1_at11/1111+2784900..2789632CCT motif family protein, expressed
LOC_Os11g05940OsAffx.7008.1.S1_at10/1111+2794876..2798125hypothetical protein
LOC_Os11g05950Os.55743.1.S1_at11/1111+2803518..2804262expressed protein
LOC_Os11g05960OsAffx.18698.1.S1_at11/1111+2805561..2805887hypothetical protein
LOC_Os11g05970OsAffx.18699.1.S1_at11/1111+2806826..2808073pyridine nucleotide-disulphide oxidoreductase family protein, putative
LOC_Os11g05980Os.53017.1.S1_at11/1111+2810377..2813120pentatricopeptide, putative, expressed
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os11g06000OsAffx.18700.1.S1_at11/1111+2826425..2826894hypothetical protein
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18698.1.S1_at--690--1671Chr11:2805826..2805850 (25 bp)
AGCCGCTTAGCGGTGACCTTATCAG
LOC_Os11g05960
OsAffx.18698.1.S1_at--915--9991Chr11:2805819..2805843 (25 bp)
TAGCGGTGACCTTATCAGTGAACTC
LOC_Os11g05960
OsAffx.18698.1.S1_at--932--7751Chr11:2805815..2805839 (25 bp)
GGTGACCTTATCAGTGAACTCCGCC
LOC_Os11g05960
OsAffx.18698.1.S1_at--799--9411Chr11:2805785..2805809 (25 bp)
TCGTCGCTTCCATCGAGGGATCTAT
LOC_Os11g05960
OsAffx.18698.1.S1_at--147--10631Chr11:2805778..2805802 (25 bp)
TTCCATCGAGGGATCTATTCGGGCC
LOC_Os11g05960
OsAffx.18698.1.S1_at--990--9371Chr11:2805773..2805797 (25 bp)
TCGAGGGATCTATTCGGGCCAGACC
LOC_Os11g05960
OsAffx.18698.1.S1_at--153--451Chr11:2805766..2805790 (25 bp)
ATCTATTCGGGCCAGACCGCTGTCA
LOC_Os11g05960
OsAffx.18698.1.S1_at--659--3811Chr11:2805698..2805722 (25 bp)
CTCCTCCACACACGACAGATGGGAG
LOC_Os11g05960
OsAffx.18698.1.S1_at--341--3311Chr11:2805692..2805716 (25 bp)
CACACACGACAGATGGGAGGCAAGA
LOC_Os11g05960
OsAffx.18698.1.S1_at--914--8011Chr11:2805661..2805685 (25 bp)
GGAGGATGGCACGATCGACAAGCTC
LOC_Os11g05960
OsAffx.18698.1.S1_at--242--3951Chr11:2805604..2805628 (25 bp)
CGGACGGCGCAACTGACGAGGTTGA
LOC_Os11g05960
Target Sequence 
AGCCGCTTAGCGGTGACCTTATCAGTGAACTCCGCCTCTCCTCGTCGCTTCCATCGAGGGATCTATTCGGGCCAGACCGC
TGTCACCTCTTCACCGCAGGACTCCTCTCCCGCCTCGTCCTGCCTAGCCTCCTCCACACACGACAGATGGGAGGCAAGAG
AGGTGGGAGGATGGCACGATCGACAAGCTCGAGGCGGGGCACAGGGACGCAGGGAGCGCAGGCGGACGGCGCAACTGACG
AGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis