Browse Element(s) Details


OsAffx.18753.3.S1_x_at

Description tigr:9639.m00832
TID=OsAffx.18753.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kelch motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g088304/11kelch repeat-containing F-box family protein, putative
LOC_Os11g089091/11expressed protein
LOC_Os11g088201/11hypothetical protein
LOC_Os11g087071/11expressed protein
LOC_Os04g528301/11kelch repeat-containing F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08750Os.53818.1.S1_at11/1111+4651264..4653407Pectinesterase family protein, expressed
LOC_Os11g08760Os.9658.1.S1_at5/1111+4654891..4658106Pectinesterase family protein
LOC_Os11g08770OsAffx.25936.7.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.1.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.2.S1_x_at4/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.5.S1_x_at2/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08780NANA11+4664225..4664440hypothetical protein
LOC_Os11g08790Os.19439.2.S1_at11/1111+4665104..4666395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08800OsAffx.17922.1.S1_x_at5/1111+4666677..4668998hypothetical protein
LOC_Os11g08810Os.10827.1.S1_x_at11/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08810Os.46055.2.S1_x_at5/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08820OsAffx.18753.3.S1_x_at1/1111+4674852..4675538hypothetical protein
LOC_Os11g08830OsAffx.18753.3.S1_x_at4/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.18753.3.S1_at3/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.22433.3.S1_s_at2/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08840OsAffx.30892.1.S1_at10/1111+4679452..4680615hypothetical protein
LOC_Os11g08850NANA11+4685094..4686462retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08860Os.8169.1.S1_at10/1111+4687378..4688578expressed protein
LOC_Os11g08870Os.53818.1.S1_at7/1111+4694022..4699515retrotransposon protein, putative, unclassified
LOC_Os11g08880OsAffx.30891.1.S1_at11/1111+4701168..4701798hypothetical protein
LOC_Os11g08880OsAffx.30891.1.S1_x_at8/1111+4701168..4701798hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18753.3.S1_x_at--1145--9173Chr11:4710323..4710347 (25 bp)
TGCCATAGGCAGCTACGACCCCAAG
LOC_Os11g08909
OsAffx.18753.3.S1_x_at--660--5831NONE
GACCTACGAGGCCACATATTTTATA
NONE
OsAffx.18753.3.S1_x_at--463--1751NONE
ACCTACGAGGCCACATATTTTATAT
NONE
OsAffx.18753.3.S1_x_at--1012--4291NONE
CCTACGAGGCCACATATTTTATATT
NONE
OsAffx.18753.3.S1_x_at--361--3711NONE
CTACGAGGCCACATATTTTATATTC
NONE
OsAffx.18753.3.S1_x_at--207--1871NONE
ACGAGGCCACATATTTTATATTCAT
NONE
OsAffx.18753.3.S1_x_at--102--6231NONE
GAGGCCACATATTTTATATTCATCT
NONE
OsAffx.18753.3.S1_x_at--518--8451Chr11:4676709..4677047 (25 bp)
GGCCACATATTTTATATTCATCTTT
LOC_Os11g08830
OsAffx.18753.3.S1_x_at--363--10351Chr11:4677033..4677057 (25 bp)
TTTATATTCATCTTTGCCTCAGGAA
LOC_Os11g08830
OsAffx.18753.3.S1_x_at--73--4892Chr11:4677058..4677082 (25 bp)
GCTTTGGTGAGATTGCTATTGTTGC
LOC_Os11g08830
OsAffx.18753.3.S1_x_at--253--7651Chr11:4677151..4677175 (25 bp)
GGGAGACTTTACCAGACATGAACTT
LOC_Os11g08830
Target Sequence 
TGCCATAGGCAGCTACGACCCCAAGGCGTTCTGCTCCAAGACGACAGACGTAGCATCGTGCCTTAGGGTGTTCCCGACAC
TCCCAGACATCGTCACCAAGGCGCAGGACAACCAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCATTCAAGACCTAC
GAGGCCACATATTTTATATTCATCTTTGCCTCAGGAAGCTTTGGTGAGATTGCTATTGTTGCTGGTGGGTGTGATAAGAA
TGGACAGGTGCTGAAATCTGCCGAGCTGTACAATTCAGAGACTGGTCATTGGGAGACTTTACCAGACATGAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18753.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis