Browse Element(s) Details


OsAffx.18839.1.S1_at

Description tigr:9639.m01289
TID=OsAffx.18839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1394011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13920OsAffx.30966.3.A1_x_at11/1111+7678841..7688349AT hook motif-containing protein, putative
LOC_Os11g13930OsAffx.18838.1.S1_at10/1111+7689853..7691892ZF-HD protein dimerisation region containing protein, expressed
LOC_Os11g13940OsAffx.18839.1.S1_at11/1111+7707484..7712471NB-ARC domain containing protein, expressed
LOC_Os11g13950NANA11+7716612..7717241hypothetical protein
LOC_Os11g13960OsAffx.30226.2.S1_s_at5/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.442.1.S1_x_at3/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.24587.1.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.4.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.2.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.5.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.4.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.19052.1.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18839.1.S1_at--1062--5171Chr11:7708046..7708070 (25 bp)
GCAAGTGATGCCTCTTTTGCAGAAA
LOC_Os11g13940
OsAffx.18839.1.S1_at--104--2351Chr11:7708001..7708025 (25 bp)
AAAGCTTAGAGCTCTTCCTCAGCAG
LOC_Os11g13940
OsAffx.18839.1.S1_at--1066--851Chr11:7707953..7707977 (25 bp)
ATGGCTCCACATAGAGAGGGCTCAA
LOC_Os11g13940
OsAffx.18839.1.S1_at--484--5351Chr11:7707913..7707937 (25 bp)
GAAGACCTTACTTTCCTTTCTGACT
LOC_Os11g13940
OsAffx.18839.1.S1_at--488--8951Chr11:7707893..7707917 (25 bp)
TGACTCCCTTTTACTCAGCAAGTGT
LOC_Os11g13940
OsAffx.18839.1.S1_at--939--8051Chr11:7707860..7707884 (25 bp)
GGAGAGATTGTCAAATCTTCCTCAA
LOC_Os11g13940
OsAffx.18839.1.S1_at--107--6931Chr11:7707824..7707848 (25 bp)
GTATGTATCTGAATGTCCTGCTTTA
LOC_Os11g13940
OsAffx.18839.1.S1_at--529--9251Chr11:7707809..7707833 (25 bp)
TCCTGCTTTACGGTGGGCCCAGAAG
LOC_Os11g13940
OsAffx.18839.1.S1_at--163--5031Chr11:7707746..7707770 (25 bp)
GCAGATGGAATTTCCCCTTTGGTTA
LOC_Os11g13940
OsAffx.18839.1.S1_at--475--6631Chr11:7707617..7707641 (25 bp)
GTTGTGTATGTTCTTTTTCTTCTTC
LOC_Os11g13940
OsAffx.18839.1.S1_at--727--6671Chr11:7707555..7707579 (25 bp)
GTTGCTTTTAAGTTTGCTACCTCAT
LOC_Os11g13940
Target Sequence 
GCAAGTGATGCCTCTTTTGCAGAAATTGGAACTTGGAGACTGTCCAAAGCTTAGAGCTCTTCCTCAGCAGCTAGCGCAGG
CGACCAGTTTGAAATGGCTCCACATAGAGAGGGCTCAAGCTTTGAAGGTGGTGGAAGACCTTACTTTCCTTTCTGACTCC
CTTTTACTCAGCAAGTGTGAAGGTTTGGAGAGATTGTCAAATCTTCCTCAAGTTAGAACTTTGTATGTATCTGAATGTCC
TGCTTTACGGTGGGCCCAGAAGCTGGATTGTGTTCAACAATTGTGGTTATCAAAGGATTTGCAGATGGAATTTCCCCTTT
GGTTATCTTTACTTAAACAACGGTATCAACAACTTCATGGAGAGGAATTAGATCTCTACACATGGTGATAACAAATGATC
AGTTAGAGCAAACTTATTAATAATCTTCTGTTGTGTATGTTCTTTTTCTTCTTCTTGTTTTTTTTTTTTACCTTCCTCGC
CCTTCTTTTCTGTTGCTTTTAAGTTTGCTACCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis