Browse Element(s) Details


OsAffx.18846.1.S1_at

Description tigr:9639.m01325
TID=OsAffx.18846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polygalacturonase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1440011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14350Os.14491.2.S1_x_at3/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.47463.1.S1_x_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350OsAffx.20057.1.S1_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14360OsAffx.7107.1.S1_at11/1111+8058529..8060562Zinc knuckle family protein
LOC_Os11g14370OsAffx.20973.1.S1_at1/1111+8064348..8066349hypothetical protein
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14390Os.51056.1.S1_at11/1111+8078330..8080286expressed protein
LOC_Os11g14400OsAffx.18846.1.S1_at11/1111+8080444..8081983Polygalacturonase family protein, expressed
LOC_Os11g14410Os.56125.1.S1_at11/1111+8085613..8087684Polygalacturonase precursor, putative, expressed
LOC_Os11g14420Os.22882.1.S1_at9/1111+8091330..8095052Protein kinase domain containing protein, expressed
LOC_Os11g14430Os.8330.2.S1_a_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14430Os.8330.1.S1_x_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14440Os.50133.1.S1_at11/1111+8101334..8102798expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18846.1.S1_at--514--371Chr11:8081335..8081359 (25 bp)
ATCAAGCAGTCCACCGGCGTGACCG
LOC_Os11g14400
OsAffx.18846.1.S1_at--755--9491Chr11:8081274..8081298 (25 bp)
TCTCCATGGTCGAGGGCTCCTCCGA
LOC_Os11g14400
OsAffx.18846.1.S1_at--1004--1851Chr11:8081250..8081274 (25 bp)
ACGTCCTGATCGAGGCCGTCACTTG
LOC_Os11g14400
OsAffx.18846.1.S1_at--1047--8471Chr11:8081095..8081119 (25 bp)
TGGCGGTGCGGAACATCACCGTGAA
LOC_Os11g14400
OsAffx.18846.1.S1_at--162--2511Chr11:8081084..8081108 (25 bp)
AACATCACCGTGAAGGGCGCGGCGC
LOC_Os11g14400
OsAffx.18846.1.S1_at--449--4251Chr11:8081056..8081080 (25 bp)
CCGGGACGACGAACGGGCTGCGGAT
LOC_Os11g14400
OsAffx.18846.1.S1_at--579--3931Chr11:8080830..8081004 (25 bp)
CGGCGTCGTCATGCGGAACGGGTCG
LOC_Os11g14400
OsAffx.18846.1.S1_at--88--4651Chr11:8080789..8080813 (25 bp)
GCGTGTCGTACACGGACATCGAGGG
LOC_Os11g14400
OsAffx.18846.1.S1_at--195--1011Chr11:8080739..8080763 (25 bp)
AGGTTCGACTGCAGCCCGAGCCGGC
LOC_Os11g14400
OsAffx.18846.1.S1_at--720--531Chr11:8080703..8080727 (25 bp)
ATCGCCATGAGGGACGTCCGGCTGA
LOC_Os11g14400
OsAffx.18846.1.S1_at--356--8051Chr11:8080692..8080716 (25 bp)
GGACGTCCGGCTGAGGTACCAGCCA
LOC_Os11g14400
Target Sequence 
ATCAAGCAGTCCACCGGCGTGACCGTCCGCAACGCCGTCATCGGCACCGGCGACGACTGCGTCTCCATGGTCGAGGGCTC
CTCCGACGTCCTGATCGAGGCCGTCACTTGCGGCCCCGGCCACGGCATCAGCATCGGGAGCCTGGGGGACACGCCGGAGC
AGGTGGCGGTGCGGAACATCACCGTGAAGGGCGCGGCGCTCGCCGGGACGACGAACGGGCTGCGGATCAAGACGTGGGCG
AAGGCGAACGCCGGCGCGGTCGCCGGCGTCTCCTTCTCCGGCGTCGTCATGCGGAACGGGTCGGGGATCGAGATCAGCGG
CGTGTCGTACACGGACATCGAGGGGACGTCGGCGACGGCGACGGCGGTGAGGTTCGACTGCAGCCCGAGCCGGCCGTGCG
CCGGGATCGCCATGAGGGACGTCCGGCTGAGGTACCAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis