Browse Element(s) Details


OsAffx.18957.1.S1_at

Description tigr:9639.m01885
TID=OsAffx.18957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2013011/11hypothetical protein
LOC_Os07g277403/11retrotransposon protein, putative, unclassified
LOC_Os03g432701/11retrotransposon protein, putative, unclassified
LOC_Os03g358701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20110NANA11+11594013..11597209hypothetical protein
LOC_Os11g20120Os.48015.1.A1_x_at2/1111+11597599..11603078retrotransposon protein, putative, unclassified
LOC_Os11g20120Os.54151.1.S1_x_at2/1111+11597599..11603078retrotransposon protein, putative, unclassified
LOC_Os11g20120Os.38764.1.S1_x_at1/1111+11597599..11603078retrotransposon protein, putative, unclassified
LOC_Os11g20120OsAffx.22699.1.S1_x_at1/1111+11597599..11603078retrotransposon protein, putative, unclassified
LOC_Os11g20130OsAffx.18957.1.S1_at11/1111+11606567..11607019hypothetical protein
LOC_Os11g20140NANA11+11610192..11610662hypothetical protein
LOC_Os11g20150OsAffx.22947.2.S1_x_at9/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20150OsAffx.22947.3.S1_x_at6/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20150OsAffx.22947.1.S1_x_at6/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20150OsAffx.22947.5.S1_x_at3/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20160OsAffx.31072.1.S1_at11/1111+11627877..11629508O-methyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18957.1.S1_at--402--9451Chr11:11606965..11606989 (25 bp)
TCGGCTAACCCAGGGTCCATTAAGG
LOC_Os11g20130
OsAffx.18957.1.S1_at--35--8151Chr11:11606942..11606966 (25 bp)
GGAAAAACTCCAGAGGCTAGGCCTG
LOC_Os11g20130
OsAffx.18957.1.S1_at--1128--6191Chr11:11606930..11606954 (25 bp)
GAGGCTAGGCCTGAGTGACATCAAT
LOC_Os11g20130
OsAffx.18957.1.S1_at--345--4871Chr11:11606927..11606951 (25 bp)
GCTAGGCCTGAGTGACATCAATGAA
LOC_Os11g20130
OsAffx.18957.1.S1_at--1120--5211Chr11:11606900..11606924 (25 bp)
GAATATAGTGACTGTCGATCCAGAA
LOC_Os11g20130
OsAffx.18957.1.S1_at--571--4571Chr11:11606827..11606851 (25 bp)
GCGCGAGATCAATTCTTAAACTCAT
LOC_Os11g20130
OsAffx.18957.1.S1_at--232--3232Chr11:11606765..11606789 (25 bp)
CAAGATAAAGGTAGTTCCTGATGAT
LOC_Os11g20130
OsAffx.18957.1.S1_at--655--4452Chr11:11606701..11606725 (25 bp)
GCCTCAGATGAATCGGCTCAACCAA
LOC_Os11g20130
OsAffx.18957.1.S1_at--588--5254Chr11:11606692..11606716 (25 bp)
GAATCGGCTCAACCAAGTGACAAAG
LOC_Os11g20130
OsAffx.18957.1.S1_at--1059--2311Chr11:11606671..11606695 (25 bp)
AAAGGTGCTACAGACGGCTCGGCTC
LOC_Os11g20130
OsAffx.18957.1.S1_at--542--5731Chr11:11606659..11606683 (25 bp)
GACGGCTCGGCTCAAGAAAATCAGG
LOC_Os11g20130
Target Sequence 
TCGGCTAACCCAGGGTCCATTAAGGAAAAACTCCAGAGGCTAGGCCTGAGTGACATCAATGAAGGGAATATAGTGACTGT
CGATCCAGAAAAGTTCACACCTGATCAAAAGAAGGATTTCGAAGCAATGATGCAACAAGCGCGAGATCAATTCTTAAACT
CATTCATGCAGACTCGCAAGGGAACATTTGTTCAGAAGTACAAGATAAAGGTAGTTCCTGATGATCCTGAGACCAGTTCT
TCTAAGGAAGGAGAGGGGAAAAGAGCCTCAGATGAATCGGCTCAACCAAGTGACAAAGGTGCTACAGACGGCTCGGCTCA
AGAAAATCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis