Browse Element(s) Details


OsAffx.18991.1.S1_at

Description tigr:9639.m02168
TID=OsAffx.18991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2452011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24484Os.5278.1.S1_at11/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24484Os.7026.2.S1_at1/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24500Os.47897.1.S1_at11/1111+13469201..13471147expressed protein
LOC_Os11g24510Os.6594.1.S1_at10/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510OsAffx.3427.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510Os.4698.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24520OsAffx.18991.1.S1_at11/1111+13483170..13483496hypothetical protein
LOC_Os11g24530OsAffx.18992.1.S1_at11/1111+13486352..13488220pentatricopeptide, putative, expressed
LOC_Os11g24540Os.6096.1.S1_a_at10/1111+13496313..13507143signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18991.1.S1_at--373--7291Chr11:13483440..13483464 (25 bp)
GTGCGAACAGAGTGAAACTTGCCAG
LOC_Os11g24520
OsAffx.18991.1.S1_at--188--2071Chr11:13483424..13483448 (25 bp)
ACTTGCCAGAGGACGGCTAGCGGCT
LOC_Os11g24520
OsAffx.18991.1.S1_at--40--10871Chr11:13483400..13483424 (25 bp)
TTGGCGATGCCCAAGCTTGACTCAG
LOC_Os11g24520
OsAffx.18991.1.S1_at--101--2711Chr11:13483388..13483412 (25 bp)
AAGCTTGACTCAGCGGAGGTGCTTG
LOC_Os11g24520
OsAffx.18991.1.S1_at--228--7891Chr11:13483348..13483372 (25 bp)
GGTTAGCCAAAGTGGAACATGTCAT
LOC_Os11g24520
OsAffx.18991.1.S1_at--642--2491Chr11:13483333..13483357 (25 bp)
AACATGTCATAGACAACCGATGGCA
LOC_Os11g24520
OsAffx.18991.1.S1_at--233--851Chr11:13483314..13483338 (25 bp)
ATGGCATGGCAATGCCCGCCTGGGT
LOC_Os11g24520
OsAffx.18991.1.S1_at--1076--4471Chr11:13483297..13483321 (25 bp)
GCCTGGGTTCTCACTGGATATACTG
LOC_Os11g24520
OsAffx.18991.1.S1_at--893--3891Chr11:13483284..13483308 (25 bp)
CTGGATATACTGCATGGGTGTGTTC
LOC_Os11g24520
OsAffx.18991.1.S1_at--508--9651Chr11:13483238..13483262 (25 bp)
TCAGCGCCCACCGTAGGGATGGAAG
LOC_Os11g24520
OsAffx.18991.1.S1_at--1093--8191Chr11:13483218..13483242 (25 bp)
GGAAGGCAACGCACAAAGAGAATTT
LOC_Os11g24520
Target Sequence 
GTGCGAACAGAGTGAAACTTGCCAGAGGACGGCTAGCGGCTTGGCGATGCCCAAGCTTGACTCAGCGGAGGTGCTTGGGG
GACGTCAGGTTGGGTTAGCCAAAGTGGAACATGTCATAGACAACCGATGGCATGGCAATGCCCGCCTGGGTTCTCACTGG
ATATACTGCATGGGTGTGTTCGGGGAGAGCAGTGGCGGCGCATCAGCGCCCACCGTAGGGATGGAAGGCAACGCACAAAG
AGAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis