Browse Element(s) Details


OsAffx.19079.1.S1_x_at

Description tigr:9639.m02724
TID=OsAffx.19079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3012011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30060OsAffx.7254.1.S1_at11/1111+16982135..16986830NB-ARC domain containing protein
LOC_Os11g30070NANA11+16992638..16995970transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30080NANA11+16997649..17000094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.47463.1.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.14491.2.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30100OsAffx.7255.1.S1_at10/1111+17003671..17004348hypothetical protein
LOC_Os11g30110OsAffx.31218.1.S1_at11/1111+17005848..17007142NB-ARC domain containing protein
LOC_Os11g30120OsAffx.19079.1.S1_x_at11/1111+17010857..17011114hypothetical protein
LOC_Os11g30120OsAffx.19079.1.S1_at11/1111+17010857..17011114hypothetical protein
LOC_Os11g30130OsAffx.19080.1.S1_at11/1111+17013864..17016021hypothetical protein
LOC_Os11g30130Os.55295.1.S1_at1/1111+17013864..17016021hypothetical protein
LOC_Os11g30140NANA11+17017842..17018672retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30150OsAffx.31780.2.S1_s_at10/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_x_at2/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.1.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30159OsAffx.30217.1.S1_x_at1/1111+17030345..17032190NA
LOC_Os11g30170Os.14919.1.S1_at2/1111+17035369..17041086transposon protein, putative, Mutator sub-class
LOC_Os11g30170OsAffx.29313.1.S1_at1/1111+17035369..17041086transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19079.1.S1_x_at--645--5031Chr11:17010889..17010913 (25 bp)
GCAGATTGCCATTGGAACAGCGAGG
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--613--5071Chr11:17010930..17010954 (25 bp)
GCACCAACCGTGAGTTGGAGATCAA
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--282--6791Chr11:17010976..17011000 (25 bp)
GTTAGGCCGTCGCAACAACTTGGAT
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--1097--831Chr11:17011010..17011034 (25 bp)
ATGGACATCCTCCAGGTTGTCCGGA
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--452--4271Chr11:17011018..17011042 (25 bp)
CCTCCAGGTTGTCCGGATGGCTATT
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--1031--3471Chr11:17011022..17011046 (25 bp)
CAGGTTGTCCGGATGGCTATTGTGA
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--772--7251Chr11:17011028..17011052 (25 bp)
GTCCGGATGGCTATTGTGAAGTACT
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--983--4871Chr11:17011037..17011061 (25 bp)
GCTATTGTGAAGTACTGCCTGGAAA
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--578--7331Chr11:17011043..17011067 (25 bp)
GTGAAGTACTGCCTGGAAATACGGA
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--721--6971Chr11:17011048..17011072 (25 bp)
GTACTGCCTGGAAATACGGAAACGT
LOC_Os11g30120
OsAffx.19079.1.S1_x_at--188--3091Chr11:17011060..17011084 (25 bp)
AATACGGAAACGTATCAAGGAGCTT
LOC_Os11g30120
Target Sequence 
GCAGATTGCCATTGGAACAGCGAGGCTGGAGGAACTGCGACGCACCAACCGTGAGTTGGAGATCAAGCTCATCGTCTGCG
ACCTCATGTTAGGCCGTCGCAACAACTTGGATGACCTGACCATGGACATCCTCCAGGTTGTCCGGATGGCTATTGTGAAG
TACTGCCTGGAAATACGGAAACGTATCAAGGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19079.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis