Browse Element(s) Details


OsAffx.19080.1.S1_at

Description tigr:9639.m02725
TID=OsAffx.19080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3013011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30070NANA11+16992638..16995970transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30080NANA11+16997649..17000094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.47463.1.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.14491.2.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30100OsAffx.7255.1.S1_at10/1111+17003671..17004348hypothetical protein
LOC_Os11g30110OsAffx.31218.1.S1_at11/1111+17005848..17007142NB-ARC domain containing protein
LOC_Os11g30120OsAffx.19079.1.S1_x_at11/1111+17010857..17011114hypothetical protein
LOC_Os11g30120OsAffx.19079.1.S1_at11/1111+17010857..17011114hypothetical protein
LOC_Os11g30130OsAffx.19080.1.S1_at11/1111+17013864..17016021hypothetical protein
LOC_Os11g30130Os.55295.1.S1_at1/1111+17013864..17016021hypothetical protein
LOC_Os11g30140NANA11+17017842..17018672retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30150OsAffx.31780.2.S1_s_at10/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_x_at2/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.1.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30159OsAffx.30217.1.S1_x_at1/1111+17030345..17032190NA
LOC_Os11g30170Os.14919.1.S1_at2/1111+17035369..17041086transposon protein, putative, Mutator sub-class
LOC_Os11g30170OsAffx.29313.1.S1_at1/1111+17035369..17041086transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19080.1.S1_at--760--331Chr11:17014108..17014132 (25 bp)
ATAACAACTGTTCTTCACTTCACGG
LOC_Os11g30130
OsAffx.19080.1.S1_at--245--1651Chr11:17014135..17014159 (25 bp)
AGCGATGTGCTCTATCTGGTAACCA
LOC_Os11g30130
OsAffx.19080.1.S1_at--501--1371Chr11:17014346..17014368 (23 bp)
AGAGCTATGCTCCAGTGAACAGAAG
LOC_Os11g30130
OsAffx.19080.1.S1_at--121--5291Chr11:17014365..17014389 (25 bp)
GAAGGTAGCAATTCCCACCAAGTGT
LOC_Os11g30130
OsAffx.19080.1.S1_at--385--3531Chr11:17014416..17014438 (23 bp)
CATGCCCTTGACAGACCTTGTAGAG
LOC_Os11g30130
OsAffx.19080.1.S1_at--534--10031Chr11:17014662..17014685 (24 bp)
TAGAGGCAGCAGATCAAGTGTTTCA
LOC_Os11g30130
OsAffx.19080.1.S1_at--351--6071Chr11:17014765..17014789 (25 bp)
GAGTTCATCACTATAATTCCCATAA
LOC_Os11g30130
OsAffx.19080.1.S1_at--924--1474Chr11:17015819..17015843 (25 bp)
AGAATTCCATCAAAGCAGGCTCTGT
LOC_Os11g30130
OsAffx.19080.1.S1_at--1110--8777Chr11:17015841..17015865 (25 bp)
TGTTTCTTGCTTTCCAAATGGTCCA
LOC_Os11g30130
OsAffx.19080.1.S1_at--720--812Chr11:17015858..17015882 (25 bp)
ATGGTCCACAAGACTGCTGTAACCC
LOC_Os11g30130
OsAffx.19080.1.S1_at--461--10675Chr11:17015951..17015975 (25 bp)
TTCCTGCCAGGCTTCACATTGAGAG
LOC_Os11g30130
Target Sequence 
ATAACAACTGTTCTTCACTTCACGGTGAGCGATGTGCTCTATCTGGTAACCACAGAGCTATGCTCCAGTGAACAGAAGGT
AGCAATTCCCACCAAGTGTTCGACGTCCACACTTGCCACCTCAGCCATGCCCTTGACAGACCTTGTAGAGGCAGCAGATC
AAGTGTTTCAAGAAATATCATGTATGCTTGTGGATAGCAAAGCACATAAACTTGATGAAATGGATATGAAAGTTTTTTAT
TCCAGTGAGGAGTTCATCACTATAATTCCCATAACTCACATTATAGATGGAATTGCAGGCAAGGTGCAAAATCCAACTGC
AGAAATGAAAGTGTGCAATGTGTTTACAAGAAGGATCAACAGGCAGAATTCCATCAAAGCAGGCTCTGTTTCTTGCTTTC
CAAATGGTCCACAAGACTGCTGTAACCCCCACCATGATCAACTTCCCATTCCCTTTGCCAAATTTCAAAACCCACGAGCT
AAACATTTCCCCCACATTCCTGCCAGGCTTCACATTGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis