Browse Element(s) Details


OsAffx.19113.1.A1_at

Description tigr:9639.m02910
TID=OsAffx.19113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g031201/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed
LOC_Os05g03110OsAffx.14522.1.S1_at11/115+1209039..1210523PWWP domain containing protein, expressed
LOC_Os05g03120Os.51828.1.S1_at11/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120Os.51828.2.S1_x_at6/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120OsAffx.19113.1.A1_at1/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03130OsAffx.14523.1.S1_s_at11/115+1224313..1225030expressed protein
LOC_Os05g03140Os.35209.1.S1_s_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03140Os.53955.1.S1_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03150OsAffx.26707.1.S1_at9/115+1238093..1239939expressed protein
LOC_Os05g03160NANA5+1244665..1245102hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19113.1.A1_at--346--7751Chr11:18217196..18217220 (25 bp)
GGTGTCGGTCGGAACCCGCTCTCTC
NONE
OsAffx.19113.1.A1_at--505--3791Chr11:18217401..18217425 (25 bp)
CTCGATGCGTCGGAGGATTTGGATT
NONE
OsAffx.19113.1.A1_at--915--7911Chr11:18217421..18217445 (25 bp)
GGATTGGGAGTTCACTAGCAGCAGC
NONE
OsAffx.19113.1.A1_at--150--5971Chr11:18217496..18217520 (25 bp)
GAGAAGCAGCTTCAAGAATCACCAA
NONE
OsAffx.19113.1.A1_at--72--5071Chr11:18217501..18217525 (25 bp)
GCAGCTTCAAGAATCACCAACAAAG
NONE
OsAffx.19113.1.A1_at--174--5251Chr11:18217511..18217535 (25 bp)
GAATCACCAACAAAGAGTGAGCAAG
NONE
OsAffx.19113.1.A1_at--8--5531Chr11:18217552..18217576 (25 bp)
GAAAATGGTGGTTCTTTTGATCTAT
NONE
OsAffx.19113.1.A1_at--171--7731Chr11:18217558..18217582 (25 bp)
GGTGGTTCTTTTGATCTATATGCCC
NONE
OsAffx.19113.1.A1_at--742--6731Chr11:18217562..18217586 (25 bp)
GTTCTTTTGATCTATATGCCCTGCT
NONE
OsAffx.19113.1.A1_at--765--9551Chr11:18217564..18217588 (25 bp)
TCTTTTGATCTATATGCCCTGCTTC
NONE
OsAffx.19113.1.A1_at--292--8773Chr11:18217654..18217678 (25 bp)
TGTATGTATGGCCATTGTTGTTGTG
NONE
Target Sequence 
GGTGTCGGTCGGAACCCGCTCTCTCCTCGGGGCGCTCGTCCTCTGCGTCCGCCACCTCCTCTCCCTCGTTCTTGGCGGCG
GCTCGCCGGTGCGCCCGCAGCCACCAGTTCTTGGCGGTGGGAGGCGCCCCCGGCTGCCGCGGCAGCGTTGGCCACCACCA
CCGTCGACCTCGCCGCCACCCACCGCGTCGGCCACCACCACCGGCCTCGATGCGTCGGAGGATTTGGATTGGGAGTTCAC
TAGCAGCAGCAGTAGAAGACAACACAAGCGCAGCAGCAGCTGCAGGAAGGGAGGATGGAGGAGAAGCAGCTTCAAGAATC
ACCAACAAAGAGTGAGCAAGAGAGAGAGAGAGGTGAGAAAATGGTGGTTCTTTTGATCTATATGCCCTGCTTCTGTTTGC
AGAAATGCGTGTGTGCTTGCAGTATTGTCTTGTGGGTTGTTTCTTGGGTTTTTTTAATTGTATGTATGGCCATTGTTGTT
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19113.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis