Browse Element(s) Details


OsAffx.19180.1.S1_at

Description tigr:9639.m03226
TID=OsAffx.19180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3582011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35762Os.45976.1.S1_x_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35762Os.45976.1.S1_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35770NANA11+20498078..20499362retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35780OsAffx.19179.1.S1_at11/1111+20504026..20505551transposon protein, putative, unclassified
LOC_Os11g35790OsAffx.31314.1.S1_at10/1111+20508010..20509272hypothetical protein
LOC_Os11g35800OsAffx.8023.1.S1_at1/1111+20509826..20514193retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35810OsAffx.31315.1.S1_at11/1111+20515324..20518688Leucine Rich Repeat family protein
LOC_Os11g35820OsAffx.19180.1.S1_at11/1111+20519494..20520716hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_x_at11/1111+20525626..20525968hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_at8/1111+20525626..20525968hypothetical protein
LOC_Os11g35840NANA11+20530036..20535439Leucine Rich Repeat family protein
LOC_Os11g35850OsAffx.31316.1.S1_at11/1111+20539557..20542742Leucine Rich Repeat family protein, expressed
LOC_Os11g35860OsAffx.19181.1.S1_at11/1111+20545167..20547167Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19180.1.S1_at--178--3131Chr11:20520473..20520677 (25 bp)
AATTTGCCGGAGATTCATGGGAGAC
LOC_Os11g35820
OsAffx.19180.1.S1_at--519--31Chr11:20520389..20520413 (25 bp)
ATTGGATACTTTGGACGGGTGACTC
LOC_Os11g35820
OsAffx.19180.1.S1_at--964--5731Chr11:20520378..20520400 (23 bp)
GACGGGTGACTCGAAATTTCTGGAA
LOC_Os11g35820
OsAffx.19180.1.S1_at--66--6531Chr11:20519751..20519775 (25 bp)
GATTTGACCCTTGAAGCAAACCCAC
LOC_Os11g35820
OsAffx.19180.1.S1_at--990--5371Chr11:20519739..20519763 (25 bp)
GAAGCAAACCCACCTATCATAGTCA
LOC_Os11g35820
OsAffx.19180.1.S1_at--209--291Chr11:20519721..20519745 (25 bp)
ATAGTCAACCTCATTGACCACCTAG
LOC_Os11g35820
OsAffx.19180.1.S1_at--903--5831Chr11:20519706..20519730 (25 bp)
GACCACCTAGTAGCCTTGTGGGAAG
LOC_Os11g35820
OsAffx.19180.1.S1_at--776--7711Chr11:20519674..20519698 (25 bp)
GGGTGTACACCTGGATGACAAAGAA
LOC_Os11g35820
OsAffx.19180.1.S1_at--958--8191Chr11:20519633..20519657 (25 bp)
GGAAGTTCACAAGCAACGGACGTTA
LOC_Os11g35820
OsAffx.19180.1.S1_at--945--8791Chr11:20519580..20519604 (25 bp)
TGTTGCGGGCGCCTAGCACAAGCTT
LOC_Os11g35820
OsAffx.19180.1.S1_at--129--5131Chr11:20519565..20519589 (25 bp)
GCACAAGCTTCAACTCTTGATTTGG
LOC_Os11g35820
Target Sequence 
AATTTGCCGGAGATTCATGGGAGACGACCAGACGTGGTGCTCGGGTTGATGTTGGCAAAAGTGATTGATGATCCAATTGG
TGCAATTGGATACTTTGGACGGGTGACTCGAAATTTCTGGAAGGAAAGTCCCCAAGGAAAGGACAACGACGCTTGGGTAC
AAGATTTGACCCTTGAAGCAAACCCACCTATCATAGTCAACCTCATTGACCACCTAGTAGCCTTGTGGGAAGTGGTTCGG
GGTGTACACCTGGATGACAAAGAATCAAACCAGATTGATTGGAAGTTCACAAGCAACGGACGTTACACGGCCTCCTCGGC
CTACTGCGCGCAGTGTTGCGGGCGCCTAGCACAAGCTTCAACTCTTGATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis