Browse Element(s) Details


OsAffx.19191.1.S1_at

Description tigr:9639.m03297
TID=OsAffx.19191.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g365309/11DnaJ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36490OsAffx.19551.1.S1_x_at11/1111+21033768..21034505hypothetical protein
LOC_Os11g36490OsAffx.19551.1.S1_at10/1111+21033768..21034505hypothetical protein
LOC_Os11g36500Os.23629.1.S1_at2/1111+21035759..21038172retrotransposon protein, putative, unclassified
LOC_Os11g36510OsAffx.459.1.S1_at9/1111+21042024..21046343retrotransposon protein, putative, unclassified
LOC_Os11g36520NANA11+21047924..21048982hypothetical protein
LOC_Os11g36530OsAffx.19191.1.S1_at9/1111+21051313..21055110DnaJ domain containing protein
LOC_Os11g36550OsAffx.19193.1.S1_at11/1111+21060523..21062235hypothetical protein
LOC_Os11g36560OsAffx.31338.1.S1_at11/1111+21065313..21070948Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19191.1.S1_at--928--7331Chr11:21054638..21054662 (25 bp)
GTGCACGCTGCGTGGCCGGAACGGC
LOC_Os11g36530
OsAffx.19191.1.S1_at--131--9511Chr11:21053063..21053087 (25 bp)
TCTCTGTATGACACCGAAAGGCAGC
LOC_Os11g36530
OsAffx.19191.1.S1_at--565--6911Chr11:21053058..21053082 (25 bp)
GTATGACACCGAAAGGCAGCGTGCT
LOC_Os11g36530
OsAffx.19191.1.S1_at--998--5131Chr11:21052985..21053009 (25 bp)
GCAAACATAAACAATTTGGCTGGAT
LOC_Os11g36530
OsAffx.19191.1.S1_at--904--2231Chr11:21052975..21052999 (25 bp)
ACAATTTGGCTGGATCCATGCCACC
LOC_Os11g36530
OsAffx.19191.1.S1_at--818--8691Chr11:21052242..21052741 (25 bp)
TGTGCTTATGTCTCATCAACAGTCA
LOC_Os11g36530
OsAffx.19191.1.S1_at--83--771Chr11:21052235..21052259 (25 bp)
ATGTCTCATCAACAGTCAACACTCA
LOC_Os11g36530
OsAffx.19191.1.S1_at--272--9711Chr11:21052227..21052251 (25 bp)
TCAACAGTCAACACTCAACTCAACT
LOC_Os11g36530
OsAffx.19191.1.S1_at--1093--9691Chr11:21052217..21052237 (21 bp)
TCAACTCAACTGCTTTACAGGAGAC
LOC_Os11g36530
OsAffx.19191.1.S1_at--112--2551NONE
AACTGCTTTACAGGAGACCCTCAAC
NONE
OsAffx.19191.1.S1_at--299--3671NONE
CTTTACAGGAGACCCTCAACTGCCG
NONE
Target Sequence 
GTGCACGCTGCGTGGCCGGAACGGCGAAGAGGAGGCCTTCAGTGCCAGAGAAATTGCTGTAAAGAAGCTGGAAAATAGAG
ACTTTGTCGGTGCCCGCAAGATCGCGATTAAAGCTCAAAGGCTTTTTCCTGAGCTTGAGAACATCTCCCAGCTGTTAACT
GTCTGTGAAGTTCTTTCTTCAGCTGAGGCAAAGATATCTGGAGAGTTGGATTGGTATGGTGTTCTTCAGGTGGATAAAAT
GGCAGACGAAACAGTAATAAGAAAGCAGTACAACATACTTTCGTATCGGCTTCATCCTGATAATAATACTCTGTTTGGTG
CCGAAGCAGCATTCAGATTTGTTTCAGAAGCTCATGCAGTATTGAGTGATCATGCGAAGAGGTCTCTGTATGACACCGAA
AGGCAGCGTGCTTCAAGAGAAGTGGCCAAGGAGGCTACACAACCACCAAACAAGACTGAAGCAAACATAAACAATTTGGC
TGGATCCATGCCACCATCTGCTTCTGTGCTTATGTCTCATCAACAGTCAACACTCAACTCAACTGCTTTACAGGAGACCC
TCAACTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis