Browse Element(s) Details


OsAffx.19228.1.S1_at

Description tigr:9639.m03469
TID=OsAffx.19228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3823011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein
LOC_Os11g38210OsAffx.7335.1.S1_at11/1111+22148474..22148902expressed protein
LOC_Os11g38210Os.23172.1.S1_x_at1/1111+22148474..22148902expressed protein
LOC_Os11g38220OsAffx.19229.1.S1_s_at1/1111+22150250..22150678expressed protein
LOC_Os11g38220OsAffx.7335.1.S1_at1/1111+22150250..22150678expressed protein
LOC_Os11g38230OsAffx.19228.1.S1_at11/1111+22152816..22154225F-box domain containing protein
LOC_Os11g38240OsAffx.19229.1.S1_s_at11/1111+22155870..22156521expressed protein
LOC_Os11g38250Os.54000.1.S1_at11/1111+22157130..22158828expressed protein
LOC_Os11g38260Os.27862.1.S1_at10/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38260Os.12799.1.S1_s_at2/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38270OsAffx.31362.1.S1_at11/1111+22162134..22163672hypothetical protein
LOC_Os11g38280NANA11+22164708..22164968hypothetical protein
LOC_Os11g38290OsAffx.31422.1.S1_at10/1111+22169887..22171204hypothetical protein
LOC_Os11g38300OsAffx.31479.1.S1_x_at11/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38300OsAffx.31479.4.S1_x_at9/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38310OsAffx.31479.5.S1_x_at11/1111+22179008..22183269hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19228.1.S1_at--507--2471Chr11:22153559..22153583 (25 bp)
AACACCACAGGTTCGGTCGACATCA
LOC_Os11g38230
OsAffx.19228.1.S1_at--36--6711Chr11:22153549..22153573 (25 bp)
GTTCGGTCGACATCATTATCCAAGA
LOC_Os11g38230
OsAffx.19228.1.S1_at--520--10391Chr11:22153535..22153558 (24 bp)
TTATCCAAGAACATGAGTACTCGGG
LOC_Os11g38230
OsAffx.19228.1.S1_at--534--1571Chr11:22153237..22153261 (25 bp)
AGCGGTGTGTTACACAGACGCTTCC
LOC_Os11g38230
OsAffx.19228.1.S1_at--775--6911Chr11:22153140..22153164 (25 bp)
GTATGCTGACCATGTCTGGGTAGAG
LOC_Os11g38230
OsAffx.19228.1.S1_at--265--171Chr11:22152967..22152991 (25 bp)
ATTTTGTTTACTTCGTTAGCAGCTT
LOC_Os11g38230
OsAffx.19228.1.S1_at--189--6791Chr11:22152953..22152977 (25 bp)
GTTAGCAGCTTTCGGCAACAGACTA
LOC_Os11g38230
OsAffx.19228.1.S1_at--414--5151Chr11:22152939..22152963 (25 bp)
GCAACAGACTATTGGTGTCCACCAT
LOC_Os11g38230
OsAffx.19228.1.S1_at--91--611Chr11:22152883..22152907 (25 bp)
ATGCTACAACGGCAGTATTCCCTGT
LOC_Os11g38230
OsAffx.19228.1.S1_at--1155--1171Chr11:22152870..22152894 (25 bp)
AGTATTCCCTGTTCTAGTACCTGGG
LOC_Os11g38230
OsAffx.19228.1.S1_at--244--8151Chr11:22152846..22152870 (25 bp)
GGACAACTCTGACCCGTTCATGGAT
LOC_Os11g38230
Target Sequence 
AACACCACAGGTTCGGTCGACATCATTATCCAAGAACATGAGTACTCGGGGAGGATCTACATGGCCATGGTCTCGACATA
CTTTCCACATATCCTGTCTATCATGTTCTTTCAGCTTGAAGAGGTCGATGGCAGAGTTATGGTTTCGTATGTTGAGCGGT
GTGTTACACAGACGCTTCCCCCAGTCGAGGGTTGTGCAGTGAATGAGTTCCACATTGTTGAATGGCGTGGGAAACTATTG
CTGATCGTTATGTATGCTGACCATGTCTGGGTAGAGAATCGGAGAATTGGGATATATGCTCTGGACTTCAGCACAAACCC
TTACAGCTTGACTGAGATAAACAACTTGGATGGTGATTGTCTCTTCATTAGTTCGCGCAGCAGCAAGTCCTTTCCTGCTT
GTCAGTATGATGGAGCCAAAGGTGATTTTGTTTACTTCGTTAGCAGCTTTCGGCAACAGACTATTGGTGTCCACCATTCT
TTTGATATACTTGTGTTCAATGTGAGAGATGCTACAACGGCAGTATTCCCTGTTCTAGTACCTGGGGACAACTCTGACCC
GTTCATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis