Browse Element(s) Details


OsAffx.19274.1.S1_at

Description tigr:9639.m03697
TID=OsAffx.19274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY081708 AT5g54590MRB17_9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4040011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40360OsAffx.424.1.S1_at8/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40360OsAffx.7176.1.S1_at1/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40370OsAffx.31403.1.S1_at11/1111+23565758..23567587Protein kinase domain containing protein, expressed
LOC_Os11g40380OsAffx.31404.1.S1_at11/1111+23570270..23574297Protein kinase domain containing protein, expressed
LOC_Os11g40390Os.52589.1.S1_at11/1111+23576391..23580832expressed protein
LOC_Os11g40400OsAffx.19274.1.S1_at11/1111+23583292..23585169expressed protein
LOC_Os11g40410OsAffx.31405.1.S1_at11/1111+23588078..23590550expressed protein
LOC_Os11g40420OsAffx.31405.2.S1_at11/1111+23594940..23597170expressed protein
LOC_Os11g40430OsAffx.31406.1.S1_at11/1111+23600608..23604943Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19274.1.S1_at--427--51Chr11:23584301..23584325 (25 bp)
ATTGAGGGTGAAGCTTCAAACTCCA
LOC_Os11g40400
OsAffx.19274.1.S1_at--272--8311Chr11:23584272..23584296 (25 bp)
TGGCTTCACTGAGTTCAGTCACTCA
LOC_Os11g40400
OsAffx.19274.1.S1_at--469--9691Chr11:23584254..23584278 (25 bp)
TCACTCAGAGGTAGACGATTCAATC
LOC_Os11g40400
OsAffx.19274.1.S1_at--1011--2391Chr11:23584219..23584243 (25 bp)
AAAAATATCATCTCGGGAAAGGCAG
LOC_Os11g40400
OsAffx.19274.1.S1_at--404--8271Chr11:23584190..23584214 (25 bp)
GGCATCGTTTACAAGGCAGAACCTC
LOC_Os11g40400
OsAffx.19274.1.S1_at--535--7951Chr11:23583479..23583503 (25 bp)
GGATACTCAAAAGGATCAGACACCC
LOC_Os11g40400
OsAffx.19274.1.S1_at--243--2371Chr11:23583454..23583478 (25 bp)
AAACCTGGTCATTCTCCTGGGAGCA
LOC_Os11g40400
OsAffx.19274.1.S1_at--972--6911Chr11:23583406..23583430 (25 bp)
GTATGAGTTTTTACCTTCTGGCACC
LOC_Os11g40400
OsAffx.19274.1.S1_at--649--5091Chr11:23583386..23583410 (25 bp)
GCACCCTTGAAGATTGCCTCAGTAA
LOC_Os11g40400
OsAffx.19274.1.S1_at--566--5371Chr11:23583360..23583384 (25 bp)
GAAGAACGCAAGGAATCATTCTCAT
LOC_Os11g40400
OsAffx.19274.1.S1_at--120--2791Chr11:23583332..23583356 (25 bp)
AAGAGAGTCAGAGTGGCAACCAGCA
LOC_Os11g40400
Target Sequence 
ATTGAGGGTGAAGCTTCAAACTCCAGTAGTGGCTTCACTGAGTTCAGTCACTCAGAGGTAGACGATTCAATCCCAAAGGA
CCAAAAATATCATCTCGGGAAAGGCAGTTATGGCATCGTTTACAAGGCAGAACCTCGGGGCAAGACTGTTGCTATGAAGA
TTCTTGATAAGAGTAGCTGGCAAGGAGAGCGGGAGTTCAAGCAAGAGGTGGGGATACTCAAAAGGATCAGACACCCAAAC
CTGGTCATTCTCCTGGGAGCATGCAGTGAGAAATTTGCACTCATGTATGAGTTTTTACCTTCTGGCACCCTTGAAGATTG
CCTCAGTAAAGAAGAACGCAAGGAATCATTCTCATGGGAAGAGAGTCAGAGTGGCAACCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis