Browse Element(s) Details


OsAffx.19278.2.S1_s_at

Description tigr:9639.m03725
TID=OsAffx.19278.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4063011/11hypothetical protein
LOC_Os02g455002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40600Os.49710.1.S1_at10/1111+23725097..23726489expressed protein
LOC_Os11g40610Os.26978.1.S1_a_at11/1111+23729086..23732131early flowering 4, putative, expressed
LOC_Os11g40620NANA11+23746080..23746340hypothetical protein
LOC_Os11g40630OsAffx.19278.2.S1_s_at11/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.2.S1_at8/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.3.S1_at7/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.1.S1_at6/1111+23749067..23751121hypothetical protein
LOC_Os11g40640NANA11+23751629..23754250transposon protein, putative, Mutator sub-class
LOC_Os11g40650OsAffx.19277.1.S1_at11/1111+23758366..23759806hypothetical protein
LOC_Os11g40660OsAffx.31409.1.S1_s_at7/1111+23766621..23767283hypothetical protein
LOC_Os11g40670OsAffx.3280.1.S1_x_at1/1111+23767986..23769359retrotransposon protein, putative, unclassified
LOC_Os11g40674Os.57215.1.S1_at11/1111+23772292..23772931expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19278.2.S1_s_at--408--5433Chr11:23749381..23749405 (25 bp)
GAACCACTACTGAAGAGACTTGGAT
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--171--10873Chr11:23749400..23749424 (25 bp)
TTGGATTCTATCAAGTTTCCCAGAT
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--1070--9533Chr11:23749406..23749430 (25 bp)
TCTATCAAGTTTCCCAGATGGTTGG
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--1115--7653Chr11:23749429..23749453 (25 bp)
GGGATGAGTGTTGATAGATTTCTAA
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--291--6032Chr11:23749470..23749494 (25 bp)
GAGATGGCGGCCTGAGACTAACACA
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--292--8352Chr11:23749475..23749499 (25 bp)
GGCGGCCTGAGACTAACACATTTCA
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--459--5713Chr11:23749485..23749509 (25 bp)
GACTAACACATTTCACTTACCAGTT
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--211--672Chr11:23749516..23749540 (25 bp)
ATGACAGTTAGCCTACAAGATGTGA
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--702--4454Chr11:23749526..23749550 (25 bp)
GCCTACAAGATGTGAGTTGTCTATG
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--800--8553Chr11:23750447..23750471 (25 bp)
TGGAGGAAGCTCCACGCAGAATATG
LOC_Os11g40630
OsAffx.19278.2.S1_s_at--904--6173Chr11:23750510..23750534 (25 bp)
GAGGAGCAACATTTTGACCAGGCAA
LOC_Os11g40630
Target Sequence 
GAACCACTACTGAAGAGACTTGGATTCTATCAAGTTTCCCAGATGGTTGGGATGAGTGTTGATAGATTTCTAATTGGAGC
ATTAGTAGAGAGATGGCGGCCTGAGACTAACACATTTCACTTACCAGTTGGAGAGATGACAGTTAGCCTACAAGATGTGA
GTTGTCTATGGGGCTTACCAATTCAAGGGAAACCACGTGATTGGAGGAAGCTCCACGCAGAATATGTTAACCAATACAAT
AGAATTTGGCAAAGCATGGTTGATGAGGAGCAACATTTTGACCAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19278.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis