Browse Element(s) Details


OsAffx.19278.3.S1_at

Description tigr:9630.m04412
TID=OsAffx.19278.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4550011/11hypothetical protein
LOC_Os11g406307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45460Os.35302.1.S1_at11/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_s_at5/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_x_at1/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45470NANA2+27655556..27655789hypothetical protein
LOC_Os02g45480Os.23123.1.S1_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45480Os.23123.1.S2_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45490Os.49132.1.S1_at9/112+27662040..27665552expressed protein
LOC_Os02g45500OsAffx.19278.3.S1_at11/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.1.S1_at7/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.2.S1_s_at2/112+27674372..27675506hypothetical protein
LOC_Os02g45510NANA2+27676250..27678622transposon protein, putative, Mutator sub-class
LOC_Os02g45520Os.18559.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45520OsAffx.12508.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45530OsAffx.12509.2.S1_at11/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45530OsAffx.12509.1.S1_at2/112+27697051..27702252HOTHEAD protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19278.3.S1_at--679--5451Chr02:27674651..27674925 (25 bp)
GAACGTGCTTTCTGGCAAGTTTTGC
LOC_Os02g45500
OsAffx.19278.3.S1_at--160--4891Chr02:27674657..27674931 (25 bp)
GCTTTCTGGCAAGTTTTGCCACAAT
LOC_Os02g45500
OsAffx.19278.3.S1_at--1062--611Chr02:27674976..27675168 (25 bp)
ATGCTTGGTCCGCTCAAGGCTCTAC
LOC_Os02g45500
OsAffx.19278.3.S1_at--322--4833Chr11:23750602..23750794 (25 bp)
GCTCAAGGCTCTACGTTCTATCAAA
LOC_Os11g40630
OsAffx.19278.3.S1_at--374--8313Chr11:23750776..23750800 (25 bp)
GGCTCTACGTTCTATCAAACAAGTT
LOC_Os11g40630
OsAffx.19278.3.S1_at--232--7611Chr02:27675191..27675215 (25 bp)
GGGAATTAAATGTGCTATGAGCAGA
LOC_Os02g45500
OsAffx.19278.3.S1_at--30--7613Chr11:23750845..23750869 (25 bp)
GGGCAAGATTCTTATCTGTACATGT
LOC_Os11g40630
OsAffx.19278.3.S1_at--767--2813Chr11:23750849..23750873 (25 bp)
AAGATTCTTATCTGTACATGTTACA
LOC_Os11g40630
OsAffx.19278.3.S1_at--1075--6993Chr11:23750862..23750886 (25 bp)
GTACATGTTACAATAACGTCCAGGA
LOC_Os11g40630
OsAffx.19278.3.S1_at--795--8773Chr11:23750867..23750891 (25 bp)
TGTTACAATAACGTCCAGGATATCA
LOC_Os11g40630
OsAffx.19278.3.S1_at--140--3093Chr11:23750873..23750897 (25 bp)
AATAACGTCCAGGATATCAATATGG
LOC_Os11g40630
Target Sequence 
GAACGTGCTTTCTGGCAAGTTTTGCCACAATATCGTCATTGGTTTCAACAGTATGGGATGTACACTGTTTTTTGGATGCT
TGGTCCGCTCAAGGCTCTACGTTCTATCAAACAAGTTGCGTGGGGAATTAAATGTGCTATGAGCAGAGGATGGAGAAAGA
TGGGCAAGATTCTTATCTGTACATGTTACAATAACGTCCAGGATATCAATATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19278.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis