Browse Element(s) Details


OsAffx.19287.2.S1_s_at

Description tigr:9639.m01286
TID=OsAffx.19287.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2446011/11hypothetical protein
LOC_Os11g4091011/11hypothetical protein
LOC_Os11g1391011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24420Os.8780.1.S1_at11/118+14619766..14626792expressed protein
LOC_Os08g24420Os.8780.1.S2_at11/118+14619766..14626792expressed protein
LOC_Os08g24434Os.54383.1.S1_at11/118+14627447..14633423expressed protein
LOC_Os08g24450OsAffx.30966.3.A1_x_at11/118+14635916..14643574AT hook motif-containing protein, putative
LOC_Os08g24460OsAffx.19287.2.S1_s_at11/118+14644658..14646629hypothetical protein
LOC_Os08g24470OsAffx.31415.1.S1_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24470OsAffx.31415.2.S1_s_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24480OsAffx.29329.2.S1_x_at11/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_x_at5/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_at1/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24490OsAffx.8980.1.S1_at3/118+14661120..14662622retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24500Os.27639.1.S1_x_at3/118+14663513..14665285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24510OsAffx.17130.1.S1_at11/118+14670359..14670574hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19287.2.S1_s_at--494--8013Chr11:23987065..23987089 (25 bp)
GGAGGCATCAGTTATCTGCCTGGCA
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--625--473Chr11:23987078..23987102 (25 bp)
ATCTGCCTGGCAATGGACAATATTA
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--280--8853Chr11:23987149..23987173 (25 bp)
TGATGAATTTGGTCTAGGCAGTGAA
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--1111--3853Chr11:23987214..23987238 (25 bp)
CTGAGCATGTGTGTCACCCGGAAAA
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--426--1253Chr11:23987246..23987270 (25 bp)
AGATTAGTATCGTCTTTCTGTGATG
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--769--233Chr11:23987310..23987334 (25 bp)
ATATTTGTGGATTTGCTCGTAGCAT
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--690--4753Chr11:23987324..23987348 (25 bp)
GCTCGTAGCATTGAATCAATCCCAA
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--918--6813Chr11:23987401..23987425 (25 bp)
GTTTTTCATGCTTAATCTAGAGGCT
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--381--1473Chr11:23987557..23987581 (25 bp)
AGAAGGATCCTGAACTGTATGAAGA
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--1037--1153Chr11:23987610..23987634 (25 bp)
AGTCAAGTTAGGCTGCAACGCATTG
LOC_Os11g40910
OsAffx.19287.2.S1_s_at--1120--2333Chr11:23987736..23987760 (25 bp)
AAAGCAGTATTTCGGCCGATGGCTC
LOC_Os11g40910
Target Sequence 
GGAGGCATCAGTTATCTGCCTGGCAATGGACAATATTAGCAGGATGGAGAGTGCTCCTGCTGTTAGCGCTGACATGGAGT
GGTGTGATGAATTTGGTCTAGGCAGTGAAGAATGGACAACAAAGGTTGAAATTAAGATCAGAAATGTCCCTGAGCATGTG
TGTCACCCGGAAAAAATGGAAAGATTAGTATCGTCTTTCTGTGATGCACAAACACATAGTTTTGATGCAATGAAAAAGGA
GTATTATATTTGTGGATTTGCTCGTAGCATTGAATCAATCCCAAAGTATAAATACTTGAAGATAAAGTATGGGACAGAGA
ATGGAGTCCGGATTAAGTTTTTCATGCTTAATCTAGAGGCTACACCGTACGTTGATCTAGAAAAAGATGTTGTGGCTAAT
GAGAAGGATCCTGAACTGTATGAAGATCCAGATGTTGTGAGAGAAGCCTTTGAAAGTCAAGTTAGGCTGCAACGCATTGC
AGATGGTGAGGAAAGCAGTATTTCGGCCGATGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19287.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis