Browse Element(s) Details


OsAffx.193.1.S1_x_at

Description gb:NM_196272.1
DB_XREF= gi:37533903
TID=OsAffx.193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Red chlorophyll catabolite reductase (OSJNBa0094J09.24), mRNA.
PROD=Red chlorophyll catabolite reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g250208/11Red chlorophyll catabolite reductase, putative
LOC_Os10g250306/11Red chlorophyll catabolite reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24970OsAffx.18389.1.S1_at11/1110+12523918..12524400hypothetical protein
LOC_Os10g24980OsAffx.17094.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.25548.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.17842.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein
LOC_Os10g25010Os.50669.1.S1_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25010Os.11064.1.S1_a_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25020OsAffx.193.1.S1_x_at8/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020OsAffx.193.1.S1_at2/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020Os.5164.1.S1_at1/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25030Os.5164.1.S1_at11/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_x_at6/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_at1/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25040OsAffx.30524.1.S1_x_at11/1110+12560680..12563012Red chlorophyll catabolite reductase family protein, expressed
LOC_Os10g25060Os.46544.1.A1_at11/1110+12567955..12570741expressed protein
LOC_Os10g25060Os.46544.2.S1_x_at10/1110+12567955..12570741expressed protein
LOC_Os10g25070NANA10+12572212..12574345retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0015996biological_processchlorophyll catabolism
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.193.1.S1_x_at--872--8691Chr10:12549289..12549313 (25 bp)
TGTGCCTGCGCGATTGGCTTAGCTT
NONE
OsAffx.193.1.S1_x_at--18--10591NONE
TTCTCTCCCCACGAAATTGATTTCA
NONE
OsAffx.193.1.S1_x_at--37--2251NONE
AAATTGATTTCATGCTCCAGTCCTC
NONE
OsAffx.193.1.S1_x_at--104--8472Chr10:12555641..12555665 (25 bp)
TGGCGCAATCGACATTACATCTCTT
LOC_Os10g25030
OsAffx.193.1.S1_x_at--91--2912Chr10:12555561..12555585 (25 bp)
AAGGTAGCCCAACTTCGATCGTGGT
LOC_Os10g25030
OsAffx.193.1.S1_x_at--589--4572Chr10:12555505..12555529 (25 bp)
GCGCTCCATCCCGAATACATAGAGA
LOC_Os10g25030
OsAffx.193.1.S1_x_at--711--9171Chr10:12548304..12548379 (25 bp)
TGCCGCAGGCCCCAATACTGATGAG
LOC_Os10g25020
OsAffx.193.1.S1_x_at--216--1972Chr10:12555362..12555386 (25 bp)
ACTGATGAGCATCGACTGTGGGCAA
LOC_Os10g25030
OsAffx.193.1.S1_x_at--330--4772Chr10:12555289..12555313 (25 bp)
GCTGCTAGGGCACTTCTTCAAATTT
LOC_Os10g25030
OsAffx.193.1.S1_x_at--1115--6651Chr10:12548092..12548116 (25 bp)
GTTGACCTGACTTCAAATTTGCCGA
LOC_Os10g25020
OsAffx.193.1.S1_x_at--640--172Chr10:12555150..12555174 (25 bp)
ATTTGCCGAGGATGTTTGGTCCCGA
LOC_Os10g25030
Target Sequence 
TGTGCCTGCGCGATTGGCTTAGCTTCTCTCCCCACGAAATTGATTTCATGCTCCAGTCCTCACTACACTGCAAAGTCCCA
AATGGCGCAATCGACATTACATCTCTTCTCATCTTTCTGAACGCCTCGACAGATGCTCCACATTTCCTCATGGAATTTAT
ACAAGGTAGCCCAACTTCGATCGTGGTGCTTCTGGACCTTCTCCCACGGAAAGACCTTGCGCTCCATCCCGAATACATAG
AGAGATACTATGAAAATACTCAGGTGGACAAACAGCGTGAGAAGGTCGAAGAATTGCCGCAGGCCCCAATACTGATGAGC
ATCGACTGTGGGCAAGGAGGAGAGGGTACCTTGGAAGAGATAGTGCGTGGTCAACTAGCAACAGCTGCTAGGGCACTTCT
TCAAATTTGGCTTGATAGTTGTGCTGATCATACTTCAGAGATGGAAGAAGGCGAGAGAGAAAACATGATAAAGAGGGACC
AAATTGTAAGGTCCAAGTCAATCGAGGTTGACCTGACTTCAAATTTGCCGAGGATGTTTGGTCCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.193.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis