Browse Element(s) Details


OsAffx.19319.1.S1_s_at

Description tigr:9639.m03861
TID=OsAffx.19319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g419706/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41910Os.20693.1.S1_at11/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41910OsAffx.19316.1.S1_at10/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41920Os.57421.1.S1_at10/1111+24716973..24721003expressed protein
LOC_Os11g41940OsAffx.19317.1.S1_at11/1111+24723877..24725972hypothetical protein
LOC_Os11g41950OsAffx.19318.1.S1_at11/1111+24729015..24729569hypothetical protein
LOC_Os11g41960OsAffx.7381.1.S1_at11/1111+24730938..24731375hypothetical protein
LOC_Os11g41970OsAffx.19319.1.S1_s_at6/1111+24733468..24733837hypothetical protein
LOC_Os11g41990Os.9625.1.S1_at11/1111+24744447..24750958Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g42000Os.21794.1.S1_s_at11/1111+24756597..24761219expressed protein
LOC_Os11g42000OsAffx.19321.1.S1_at11/1111+24756597..24761219expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19319.1.S1_s_at--119--3311Chr11:24733850..24733874 (25 bp)
CACATCCGGTACCAAACCGTGGAGT
NONE
OsAffx.19319.1.S1_s_at--911--5231Chr11:24733786..24733810 (25 bp)
GAATACTTTGCTAAGATCATCCGTG
LOC_Os11g41970
OsAffx.19319.1.S1_s_at--1090--5571Chr11:24733667..24733691 (25 bp)
GAAAGGCTACGAAGCTGCAGGTGAA
LOC_Os11g41970
OsAffx.19319.1.S1_s_at--494--1451Chr11:24733579..24733603 (25 bp)
AGAAGAAACCTTACCTGCTGGCGAC
LOC_Os11g41970
OsAffx.19319.1.S1_s_at--200--9271Chr11:24733543..24733567 (25 bp)
TCCTGCAGGCGCTGAAGATTTCCCT
LOC_Os11g41970
OsAffx.19319.1.S1_s_at--193--9112Chr09:18148708..18148727 (20 bp)
TGCTCCTCATCCTGGTCAAAGAAGG
NONE
OsAffx.19319.1.S1_s_at--148--10291Chr11:24733494..24733518 (25 bp)
TTTCGACCGGGTGTTTCCATCAATG
LOC_Os11g41970
OsAffx.19319.1.S1_s_at--399--6271Chr11:24733434..24733458 (25 bp)
GATGTGCTGATACACTTCGCTGATT
NONE
OsAffx.19319.1.S1_s_at--190--4751Chr11:24733416..24733440 (25 bp)
GCTGATTAGCAGTCGAGTCGTTCTT
NONE
OsAffx.19319.1.S1_s_at--204--1211Chr11:24733377..24733401 (25 bp)
AGATTTACCTACTAGTTGTCGTAGT
NONE
OsAffx.19319.1.S1_s_at--1109--8711Chr11:24733361..24733385 (25 bp)
TGTCGTAGTATCTTCCTGTGTTGGA
NONE
Target Sequence 
CACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGATGGTTAAGGTTGGGGATCATATGGATGAATACTTTGCTAAGA
TCATCCGTGATATAAACCGGATTGAATCAAGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTATGAGAAAGGC
TATGTGGAGAAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGGTAAAGATGGAG
AAAAAACCTTACCTTCTGGTGAAGCTGATGGAGAAGAAACCTTACCTGCTGGCGACCAAGAATCCTCTCCTGCAGGCGCT
GAAGATTTCCCTGCTCCTCATCCTGGTCAAAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAACAAGCT
GAATTAGCTACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTTTTTAAGATTTA
CCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19319.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis