Browse Element(s) Details


OsAffx.19340.1.S1_at

Description tigr:9639.m03928
TID=OsAffx.19340.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4258011/11NB-ARC domain containing protein
LOC_Os11g427701/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os11g42550Os.7850.1.S1_at11/1111+25116419..25117263Dirigent-like protein, expressed
LOC_Os11g42570OsAffx.31443.1.S1_at11/1111+25119412..25120366hypothetical protein
LOC_Os11g42580OsAffx.19340.1.S1_at11/1111+25125503..25129837NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.2.S1_at11/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.3.S1_at3/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42600OsAffx.135.1.S1_at2/1111+25138883..25142079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42610Os.50833.1.S1_at2/1111+25146468..25149733transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19340.1.S1_at--1040--9771Chr11:25129285..25129309 (25 bp)
TAAGGAGCTTGAGTTGAAGTGCAAC
LOC_Os11g42580
OsAffx.19340.1.S1_at--71--6672Chr11:25261323..25261347 (25 bp)
GTTGAAGTGCAACAAGCCACTTCTT
LOC_Os11g42770
OsAffx.19340.1.S1_at--604--5271Chr11:25129381..25129405 (25 bp)
GAATGCTGATCTACAAATTCTTGCA
LOC_Os11g42580
OsAffx.19340.1.S1_at--681--3091Chr11:25129408..25129432 (25 bp)
AATACCAAGCATATGCTGCCTAGTG
LOC_Os11g42580
OsAffx.19340.1.S1_at--250--9111Chr11:25129421..25129445 (25 bp)
TGCTGCCTAGTGCTCCTGAGCGATT
LOC_Os11g42580
OsAffx.19340.1.S1_at--100--7311Chr11:25129430..25129454 (25 bp)
GTGCTCCTGAGCGATTCTTATGATG
LOC_Os11g42580
OsAffx.19340.1.S1_at--63--5891Chr11:25129438..25129462 (25 bp)
GAGCGATTCTTATGATGAAAGCCAA
LOC_Os11g42580
OsAffx.19340.1.S1_at--463--971Chr11:25129477..25129501 (25 bp)
AGGAGAGTTTCTCATGCTCAACCTT
LOC_Os11g42580
OsAffx.19340.1.S1_at--166--9091Chr11:25129491..25129515 (25 bp)
TGCTCAACCTTCTTATTGTCAAGTG
LOC_Os11g42580
OsAffx.19340.1.S1_at--898--8191Chr11:25129768..25129792 (25 bp)
GGAAGATGATCCAAGGTTTCCAGCT
LOC_Os11g42580
OsAffx.19340.1.S1_at--252--6851Chr11:25129783..25129807 (25 bp)
GTTTCCAGCTTGCTCATGGTTGTTT
LOC_Os11g42580
Target Sequence 
TAAGGAGCTTGAGTTGAAGTGCAACAAGCCACTTCTTTCATCATTTGAAAATGCCAATAAAATTTCCAAGGTGACTCTTC
ACTCTACCTTGCTGAAGAATGCTGATCTACAAATTCTTGCAAAAATACCAAGCATATGCTGCCTAGTGCTCCTGAGCGAT
TCTTATGATGAAAGCCAACTTACCTTCAACAAAGGAGAGTTTCTCATGCTCAACCTTCTTATTGTCAAGTGCCCTACCAT
CACCGACATCAGCTTCACCGAAGGAGCAGCTCCTATGCTTGAGAAGATCATCTGGTCCTTCACCAAGTTGAATTCTCTCT
CAGGCATCGACAACCTCTCCAAACTGAAGGAGCTCGAGTTCATTGGTGACCTTGTCCCTGACCAGGTGAGGATAGACATT
AATGTACATAGAAAGCATCCTGTTCTTAACCACAAGCCGCCAGAGCACCAAGACCAAGAAAACGGAAGTGAACAAGGAGA
AAAGGAAGATGATCCAAGGTTTCCAGCTTGCTCATGGTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis