Browse Element(s) Details


OsAffx.19340.2.S1_at

Description tigr:9639.m03929
TID=OsAffx.19340.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4259011/11NB-ARC domain containing protein
LOC_Os11g427203/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os11g42550Os.7850.1.S1_at11/1111+25116419..25117263Dirigent-like protein, expressed
LOC_Os11g42570OsAffx.31443.1.S1_at11/1111+25119412..25120366hypothetical protein
LOC_Os11g42580OsAffx.19340.1.S1_at11/1111+25125503..25129837NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.2.S1_at11/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.3.S1_at3/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42600OsAffx.135.1.S1_at2/1111+25138883..25142079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42610Os.50833.1.S1_at2/1111+25146468..25149733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42620NANA11+25155223..25162062retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19340.2.S1_at--188--6032Chr11:25233901..25233924 (24 bp)
GAGAGGAACCAGCACTACCTCAAGG
LOC_Os11g42720
OsAffx.19340.2.S1_at--1090--5492Chr11:25233970..25233994 (25 bp)
GAACAGATGTTACACAGCTACCTAG
LOC_Os11g42720
OsAffx.19340.2.S1_at--617--6772Chr11:25233978..25234002 (25 bp)
GTTACACAGCTACCTAGTGAAATCA
LOC_Os11g42720
OsAffx.19340.2.S1_at--397--3731Chr11:25136922..25136946 (25 bp)
CTAAGGTGCCTGAGTATACAACAAA
LOC_Os11g42590
OsAffx.19340.2.S1_at--934--2191Chr11:25136939..25136963 (25 bp)
ACAACAAAACATATCCTGCTCCTGA
LOC_Os11g42590
OsAffx.19340.2.S1_at--799--4851Chr11:25136977..25137001 (25 bp)
GCTAGCTGGCTGTATTGATTCAAAC
LOC_Os11g42590
OsAffx.19340.2.S1_at--561--2291Chr11:25137087..25137177 (25 bp)
AAATGTCTATCATGGAGCTGAGGAA
LOC_Os11g42590
OsAffx.19340.2.S1_at--578--9371Chr11:25137192..25137216 (25 bp)
TCGACGATAAGGACAGCATACTCAA
LOC_Os11g42590
OsAffx.19340.2.S1_at--932--9772Chr11:25137199..25137223 (25 bp)
TAAGGACAGCATACTCAAGAATTTG
LOC_Os11g42590
OsAffx.19340.2.S1_at--146--1732Chr11:25137323..25137347 (25 bp)
ACCAGAGTATATTTCTCCGAGCAGA
LOC_Os11g42590
OsAffx.19340.2.S1_at--973--10311Chr11:25137334..25137547 (25 bp)
TTTCTCCGAGCAGAGTAGATTGGTT
LOC_Os11g42590
Target Sequence 
GAGAGGAACCAGCACTACCTCAAGGACATTTGCAACAATATTTTACTACTCAAGTATTTGAGCCTAAGGAGAACAGATGT
TACACAGCTACCTAGTGAAATCAACAACCTCTATGAGCTGGAGGTATTGGATATTTGGCAAACTAAGGTGCCTGAGTATA
CAACAAAACATATCCTGCTCCTGAAGCTAAAGCGTCTGCTAGCTGGCTGTATTGATTCAAACAGTTCGAGTAATGCTAAA
AACAACATTTCATTCAGGAATGAGGCACCATCATCCTCCAGCGTCCAAATTCCTCTCAAGATAAAAAAAATGTCTATCAT
GGAGCTGAGGAAGCTCGGTGTGGTTATCGACGATAAGGACAGCATACTCAAGAATTTGCGTACAGCAATCAGCGACCTAT
GTGAGTGCCTCCGGTCTCTGTCTATCACTATTTTTTCCCAGTACAAAAGGAGAGGGCACTCCATCCAATGGAGACTTACC
AGAGTATATTTCTCCGAGCAGAGTAGATTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19340.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis