Browse Element(s) Details


OsAffx.1939.2.A1_at

Description tigr:9639.m03072
TID=OsAffx.1939.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3417011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34120Os.26851.1.A1_at9/1111+19469714..19482440importin, putative, expressed
LOC_Os11g34130Os.53213.1.S1_x_at10/1111+19484401..19487507expressed protein
LOC_Os11g34140OsAffx.31289.1.S1_at11/1111+19487560..19489787expressed protein
LOC_Os11g34150Os.28209.1.S1_a_at11/1111+19490834..19495702expressed protein
LOC_Os11g34150Os.49389.1.S1_x_at9/1111+19490834..19495702expressed protein
LOC_Os11g34160Os.49458.1.S1_at7/1111+19500735..19502735membrane associated salt-inducible protein, putative, expressed
LOC_Os11g34170OsAffx.1939.2.A1_at11/1111+19503878..19504689hypothetical protein
LOC_Os11g34180Os.9476.1.S1_at11/1111+19507289..19512084Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g34190Os.20141.1.S1_at10/1111+19516989..19523582expressed protein
LOC_Os11g34190OsAffx.6412.1.S1_at1/1111+19516989..19523582expressed protein
LOC_Os11g34200Os.6787.1.S1_at11/1111+19524696..19528263Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os11g34210Os.11484.1.S1_at11/1111+19528650..19533359Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1939.2.A1_at--960--1371Chr11:19503910..19503934 (25 bp)
AGAGCCGTGCCGTCTACTCAGGACT
LOC_Os11g34170
OsAffx.1939.2.A1_at--755--7151Chr11:19503921..19503945 (25 bp)
GTCTACTCAGGACTCGTCGAGCAGG
LOC_Os11g34170
OsAffx.1939.2.A1_at--55--6031Chr11:19503949..19504422 (25 bp)
GAGAGGGACCCGACTCCGAATCTGT
LOC_Os11g34170
OsAffx.1939.2.A1_at--663--4191Chr11:19503957..19504430 (25 bp)
CCCGACTCCGAATCTGTAACTACAG
LOC_Os11g34170
OsAffx.1939.2.A1_at--501--1392Chr11:19504551..19504575 (25 bp)
AGACGATGCGGTGAGAACTTCGGCA
LOC_Os11g34170
OsAffx.1939.2.A1_at--156--8912Chr11:19504562..19504586 (25 bp)
TGAGAACTTCGGCAGCCAGCGATTT
LOC_Os11g34170
OsAffx.1939.2.A1_at--688--8252Chr11:19504572..19504596 (25 bp)
GGCAGCCAGCGATTTCGCCGAGGAC
LOC_Os11g34170
OsAffx.1939.2.A1_at--956--1632Chr11:19504579..19504603 (25 bp)
AGCGATTTCGCCGAGGACAACATGG
LOC_Os11g34170
OsAffx.1939.2.A1_at--988--9111Chr11:19504615..19504639 (25 bp)
TGCGGACACCGGCAAGAGCCAATTC
LOC_Os11g34170
OsAffx.1939.2.A1_at--691--5171Chr11:19504626..19504650 (25 bp)
GCAAGAGCCAATTCACCCAGGCGGT
LOC_Os11g34170
OsAffx.1939.2.A1_at--136--4391Chr11:19504632..19504656 (25 bp)
GCCAATTCACCCAGGCGGTGGCAAT
LOC_Os11g34170
Target Sequence 
AGAGCCGTGCCGTCTACTCAGGACTCGTCGAGCAGGAGGGAGAGGGACCCGACTCCGAATCTGTAACTACAGATTCTCAG
AAGCTGTGGACTGTTTGGGGCAGCTTCTAGCAGAAGCAGCTTTTGAGAAAAGCTGTAGCTGGGACAAGCTCCCCCAAACA
GGGCCTAAGTTGGTGGACGGCGATTTTGGGGGAGACGATGCGGTGAGAACTTCGGCAGCCAGCGATTTCGCCGAGGACAA
CATGGAAGGAGAGGCCTGCGGACACCGGCAAGAGCCAATTCACCCAGGCGGTGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1939.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis