Browse Element(s) Details


OsAffx.19404.1.S1_at

Description tigr:9639.m04322
TID=OsAffx.19404.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1199011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11960OsAffx.31510.1.S1_at10/119+6739823..6740854hypothetical protein
LOC_Os09g11970OsAffx.31509.1.S1_at11/119+6744873..6745376hypothetical protein
LOC_Os09g11980Os.46785.2.S1_x_at3/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11980OsAffx.30226.2.S1_x_at2/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11980OsAffx.442.1.S1_x_at1/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11990OsAffx.19404.1.S1_at11/119+6755705..6756136hypothetical protein
LOC_Os09g12000OsAffx.7428.1.S1_at9/119+6758298..6759348hypothetical protein
LOC_Os09g12010OsAffx.7427.1.S1_at10/119+6760762..6762437hypothetical protein
LOC_Os09g12010OsAffx.19675.1.S1_at1/119+6760762..6762437hypothetical protein
LOC_Os09g12010OsAffx.19675.1.S1_x_at1/119+6760762..6762437hypothetical protein
LOC_Os09g12020NANA9+6769735..6771366retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12030NANA9+6771816..6773570retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0016020cellular_componentmembrane
GO:0008289molecular_functionlipid binding
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19404.1.S1_at--354--1631Chr09:6755737..6755761 (25 bp)
AGCGATGCTGGCGCAGCTCTACGTG
LOC_Os09g11990
OsAffx.19404.1.S1_at--718--9911Chr09:6755756..6755780 (25 bp)
TACGTGGTCGCCTCCTTTCAAGGCG
LOC_Os09g11990
OsAffx.19404.1.S1_at--335--7631Chr09:6755843..6755867 (25 bp)
GGGAGCCCTGGTGGTAGTGGTACAA
LOC_Os09g11990
OsAffx.19404.1.S1_at--727--6931Chr09:6755856..6755880 (25 bp)
GTAGTGGTACAAGGAGCTCAGCAGC
LOC_Os09g11990
OsAffx.19404.1.S1_at--798--2911Chr09:6755866..6755890 (25 bp)
AAGGAGCTCAGCAGCATCTACAAGC
LOC_Os09g11990
OsAffx.19404.1.S1_at--932--3391Chr09:6755877..6755901 (25 bp)
CAGCATCTACAAGCTCTGCAAGAGC
LOC_Os09g11990
OsAffx.19404.1.S1_at--790--2771Chr09:6755896..6755920 (25 bp)
AAGAGCCGGAAGCACCCCTGCAGGA
LOC_Os09g11990
OsAffx.19404.1.S1_at--657--8171Chr09:6755963..6755987 (25 bp)
GGAAGCGGAAGCACCCCTGTAGGAG
LOC_Os09g11990
OsAffx.19404.1.S1_at--872--4051Chr09:6756031..6756055 (25 bp)
CGATGGAACTGGGATCTCAAGCAGT
LOC_Os09g11990
OsAffx.19404.1.S1_at--26--511Chr09:6756076..6756100 (25 bp)
ATCGTATGATGTTGAGCACTTTTTC
LOC_Os09g11990
OsAffx.19404.1.S1_at--518--8871Chr09:6756082..6756106 (25 bp)
TGATGTTGAGCACTTTTTCATTTAC
LOC_Os09g11990
Target Sequence 
AGCGATGCTGGCGCAGCTCTACGTGGTCGCCTCCTTTCAAGGCGCCTCTGGGGCTACCAGCGATGGCCCTCCCTCCAGCA
GTGGGGCGAGGACTCCCACCTCCGGTGGGAGCCCTGGTGGTAGTGGTACAAGGAGCTCAGCAGCATCTACAAGCTCTGCA
AGAGCCGGAAGCACCCCTGCAGGAGTGCGGGGGAGCCCCGCGGGAGCTGGTGGTAGCCCCGGCGGTGGAAGCGGAAGCAC
CCCTGTAGGAGGAGGGAGGAGCTTTGCGGGAGGTGGGAGTGCCGACGACGGCGACGATGGAACTGGGATCTCAAGCAGTG
GGGGAAGGATGTTAAGTAGATCGTATGATGTTGAGCACTTTTTCATTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis