Browse Element(s) Details


OsAffx.31509.1.S1_at

Description tigr:9639.m04324
TID=OsAffx.31509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1197011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11940OsAffx.1646.1.S1_x_at1/119+6720117..6725646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11940OsAffx.22368.1.S1_x_at1/119+6720117..6725646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11950NANA9+6726667..6729490retrotransposon protein, putative, unclassified
LOC_Os09g11960OsAffx.31510.1.S1_at10/119+6739823..6740854hypothetical protein
LOC_Os09g11970OsAffx.31509.1.S1_at11/119+6744873..6745376hypothetical protein
LOC_Os09g11980Os.46785.2.S1_x_at3/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11980OsAffx.30226.2.S1_x_at2/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11980OsAffx.442.1.S1_x_at1/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11990OsAffx.19404.1.S1_at11/119+6755705..6756136hypothetical protein
LOC_Os09g12000OsAffx.7428.1.S1_at9/119+6758298..6759348hypothetical protein
LOC_Os09g12010OsAffx.7427.1.S1_at10/119+6760762..6762437hypothetical protein
LOC_Os09g12010OsAffx.19675.1.S1_at1/119+6760762..6762437hypothetical protein
LOC_Os09g12010OsAffx.19675.1.S1_x_at1/119+6760762..6762437hypothetical protein
LOC_Os09g12020NANA9+6769735..6771366retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0016020cellular_componentmembrane
GO:0008289molecular_functionlipid binding
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31509.1.S1_at--645--9071Chr09:6744919..6744943 (25 bp)
TGCTCTACATGGTCGCGTCCTTTCA
LOC_Os09g11970
OsAffx.31509.1.S1_at--589--5891Chr09:6744995..6745019 (25 bp)
GAGCTCCGGCGGAAGTAGTTCCAGT
LOC_Os09g11970
OsAffx.31509.1.S1_at--977--2831Chr09:6745007..6745031 (25 bp)
AAGTAGTTCCAGTGGCTCGAGCTCT
LOC_Os09g11970
OsAffx.31509.1.S1_at--236--1451Chr09:6745047..6745071 (25 bp)
AGAAGCCCTGTAGGATCTGCGAGCC
LOC_Os09g11970
OsAffx.31509.1.S1_at--546--10091Chr09:6745057..6745081 (25 bp)
TAGGATCTGCGAGCCCAAGTAGTGG
LOC_Os09g11970
OsAffx.31509.1.S1_at--804--10071Chr09:6745076..6745100 (25 bp)
TAGTGGAAGGAACCCAGCAACAACT
LOC_Os09g11970
OsAffx.31509.1.S1_at--623--7431Chr09:6745114..6745138 (25 bp)
GTGTAAGGAGCCCTGCAACCGCAAG
LOC_Os09g11970
OsAffx.31509.1.S1_at--305--9011Chr09:6745127..6745151 (25 bp)
TGCAACCGCAAGAGCTGGGAGCCCC
LOC_Os09g11970
OsAffx.31509.1.S1_at--214--8191Chr09:6745164..6745188 (25 bp)
GGAACCACCCTTGCAGGAGCAGGGA
LOC_Os09g11970
OsAffx.31509.1.S1_at--897--1651Chr09:6745206..6745230 (25 bp)
AGCCCTGTAGGAGGTGGAACGATCC
LOC_Os09g11970
OsAffx.31509.1.S1_at--701--3571Chr09:6745321..6745345 (25 bp)
CATATAATATTGAGCACATTGCCAT
LOC_Os09g11970
Target Sequence 
TGCTCTACATGGTCGCGTCCTTTCAAGGTGCCTCTGGGGCCGCCGCCGGCGGCTCTCCCTCCAGCGGTGGGGGGAGGAGC
TCCGGCGGAAGTAGTTCCAGTGGCTCGAGCTCTGGCGGTAGCAGCACAAGAAGCCCTGTAGGATCTGCGAGCCCAAGTAG
TGGAAGGAACCCAGCAACAACTGGGAGCCCCGGGGGTGTAAGGAGCCCTGCAACCGCAAGAGCTGGGAGCCCCGGGGGTG
GAACCGGAACCACCCTTGCAGGAGCAGGGAGCCCCGGCGGCGGAAGGAGCCCTGTAGGAGGTGGAACGATCCCTGCAGGG
GCAGGGAATCAAGGCAGCGGGTCATGGAGCGGTGACTATGGAAGTAGAAGCTCGGATGGCGGGGGAAGGATGTTATGTAG
ACCATATAATATTGAGCACATTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis