Browse Element(s) Details


OsAffx.7427.1.S1_at

Description tigr:9639.m04320
TID=OsAffx.7427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1201010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11960OsAffx.31510.1.S1_at10/119+6739823..6740854hypothetical protein
LOC_Os09g11970OsAffx.31509.1.S1_at11/119+6744873..6745376hypothetical protein
LOC_Os09g11980Os.46785.2.S1_x_at3/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11980OsAffx.30226.2.S1_x_at2/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11980OsAffx.442.1.S1_x_at1/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11990OsAffx.19404.1.S1_at11/119+6755705..6756136hypothetical protein
LOC_Os09g12000OsAffx.7428.1.S1_at9/119+6758298..6759348hypothetical protein
LOC_Os09g12010OsAffx.7427.1.S1_at10/119+6760762..6762437hypothetical protein
LOC_Os09g12010OsAffx.19675.1.S1_at1/119+6760762..6762437hypothetical protein
LOC_Os09g12010OsAffx.19675.1.S1_x_at1/119+6760762..6762437hypothetical protein
LOC_Os09g12020NANA9+6769735..6771366retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12030NANA9+6771816..6773570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12040NANA9+6782925..6790685retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7427.1.S1_at--334--4571Chr09:6762366..6762390 (25 bp)
GCGCATCGGTAATGTGGTACCGACT
LOC_Os09g12010
OsAffx.7427.1.S1_at--657--792Chr07:25630667..25630686 (20 bp)
ATGTGGTACCGACTCGGTCGCGCAT
NONE
OsAffx.7427.1.S1_at--287--4971Chr09:6762295..6762319 (25 bp)
GCATCCCCAGTCTGTGGTTTGCCCG
LOC_Os09g12010
OsAffx.7427.1.S1_at--8--2631Chr09:6762259..6762283 (25 bp)
AACCGTTCCGCGGATTAGCTATATT
LOC_Os09g12010
OsAffx.7427.1.S1_at--1049--4211Chr09:6762252..6762276 (25 bp)
CCGCGGATTAGCTATATTTTTGCAA
LOC_Os09g12010
OsAffx.7427.1.S1_at--1129--171Chr09:6762237..6762261 (25 bp)
ATTTTTGCAAATTAATCTTAGACAC
LOC_Os09g12010
OsAffx.7427.1.S1_at--584--431NONE
ATCTTAGACACTTGTCGCTTCGACA
NONE
OsAffx.7427.1.S1_at--972--10511Chr09:6760819..6760843 (25 bp)
TTCAGCTCCCGCAATTCATGGGTTT
LOC_Os09g12010
OsAffx.7427.1.S1_at--984--9611Chr09:6760804..6760828 (25 bp)
TCATGGGTTTTTAGGCCAGCTTCTA
LOC_Os09g12010
OsAffx.7427.1.S1_at--613--7791Chr09:6760799..6760823 (25 bp)
GGTTTTTAGGCCAGCTTCTATTTGT
LOC_Os09g12010
OsAffx.7427.1.S1_at--83--891Chr09:6760792..6760816 (25 bp)
AGGCCAGCTTCTATTTGTCTATAAT
LOC_Os09g12010
Target Sequence 
GCGCATCGGTAATGTGGTACCGACTCGGTCGCGCATCCCGGTTCTGCGCGACCGGCTCGGGTTCCGCTCCCGCATCCCCA
GTCTGTGGTTTGCCCGCTCTCCCACACAACCGTTCCGCGGATTAGCTATATTTTTGCAAATTAATCTTAGACACTTGTCG
CTTCGACAACAGCTGGCGCCGACTGTGGGGACCTCTGAGCGAAACCACGGAGAGCGAATGTCACCGAAGAGGGTCGCGAA
GGAGAAGGTTGCTAAGCGAAAGGAGAGTGAAGCAGGAGGGGAGATGGCCGCCGAAGAGGGGGTAGTGCCTTTGGCCCCCG
TCGTCGAAGCTGGTGTGGCATCATTGGCTTCGGCACCCGCGCCGCAACCACCATCTTCAGCTCCCGCAATTCATGGGTTT
TTAGGCCAGCTTCTATTTGTCTATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis