Browse Element(s) Details


OsAffx.19436.1.S1_at

Description tigr:9639.m04491
TID=OsAffx.19436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4800011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47950OsAffx.7446.1.S1_at10/1111+28363415..28365589Cyclin, N-terminal domain containing protein
LOC_Os11g47960OsAffx.7447.1.S1_at11/1111+28374523..28374975hypothetical protein
LOC_Os11g47970Os.11573.7.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A2_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A1_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.5.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47980OsAffx.19434.1.S1_at11/1111+28380025..28381904expressed protein
LOC_Os11g47980Os.22640.1.A1_at1/1111+28380025..28381904expressed protein
LOC_Os11g47990OsAffx.27915.1.S1_at4/1111+28382689..28382952hypothetical protein
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed
LOC_Os11g48010OsAffx.19437.1.S1_at11/1111+28395006..28395278hypothetical protein
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed
LOC_Os11g48050Os.9463.1.S1_at11/1111+28407322..28409136expressed protein
LOC_Os11g48060Os.5982.1.S1_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48060OsAffx.31531.1.S1_s_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009934biological_processregulation of meristem organization
GO:0010093biological_processspecification of floral organ identity
GO:0016481biological_processnegative regulation of transcription
GO:0045449biological_processregulation of transcription
GO:0048441biological_processpetal development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19436.1.S1_at--80--7591Chr11:28390175..28390199 (25 bp)
GGGCTCGTCTCCGACAGAGGCAGAC
LOC_Os11g48000
OsAffx.19436.1.S1_at--246--2811Chr11:28390100..28390124 (25 bp)
AAGATCAGCAAGCTGGCCCTTACTA
LOC_Os11g48000
OsAffx.19436.1.S1_at--908--2671Chr11:28390091..28390115 (25 bp)
AAGCTGGCCCTTACTATACCTCTTT
LOC_Os11g48000
OsAffx.19436.1.S1_at--254--10351Chr11:28390081..28390105 (25 bp)
TTACTATACCTCTTTCTCTAAACCT
LOC_Os11g48000
OsAffx.19436.1.S1_at--885--10171Chr11:28390077..28390101 (25 bp)
TATACCTCTTTCTCTAAACCTAGCA
LOC_Os11g48000
OsAffx.19436.1.S1_at--527--1751Chr11:28390050..28390074 (25 bp)
ACCTCCACCGATAATACTACTTGCA
LOC_Os11g48000
OsAffx.19436.1.S1_at--1141--291Chr11:28390037..28390061 (25 bp)
ATACTACTTGCAGTAACGACATACT
LOC_Os11g48000
OsAffx.19436.1.S1_at--1115--1831Chr11:28390022..28390046 (25 bp)
ACGACATACTACTGCTAGCAAGAGA
LOC_Os11g48000
OsAffx.19436.1.S1_at--274--331Chr11:28390017..28390041 (25 bp)
ATACTACTGCTAGCAAGAGATCAAG
LOC_Os11g48000
OsAffx.19436.1.S1_at--886--3231Chr11:28389985..28390009 (25 bp)
CAAGAAGAGGGTACCGAGACAGCAA
LOC_Os11g48000
OsAffx.19436.1.S1_at--871--5171Chr11:28389964..28389988 (25 bp)
GCAAGTACAAGTAGTTGCAGATCAG
LOC_Os11g48000
Target Sequence 
GGGCTCGTCTCCGACAGAGGCAGACCTCCTCCTCCTCCTCCCCCAGCCACCAAGAAGAAGAAGCTGAAGCACCCCAAGAT
CAGCAAGCTGGCCCTTACTATACCTCTTTCTCTAAACCTAGCACCACCTCCACCGATAATACTACTTGCAGTAACGACAT
ACTACTGCTAGCAAGAGATCAAGAAACCATCAAGAAGAGGGTACCGAGACAGCAAGTACAAGTAGTTGCAGATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis