Browse Element(s) Details


OsAffx.19437.1.S1_at

Description tigr:9639.m04492
TID=OsAffx.19437.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4801011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47960OsAffx.7447.1.S1_at11/1111+28374523..28374975hypothetical protein
LOC_Os11g47970Os.11573.7.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A2_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A1_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.5.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47980OsAffx.19434.1.S1_at11/1111+28380025..28381904expressed protein
LOC_Os11g47980Os.22640.1.A1_at1/1111+28380025..28381904expressed protein
LOC_Os11g47990OsAffx.27915.1.S1_at4/1111+28382689..28382952hypothetical protein
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed
LOC_Os11g48010OsAffx.19437.1.S1_at11/1111+28395006..28395278hypothetical protein
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed
LOC_Os11g48050Os.9463.1.S1_at11/1111+28407322..28409136expressed protein
LOC_Os11g48060Os.5982.1.S1_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48060OsAffx.31531.1.S1_s_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19437.1.S1_at--1085--2052Chr11:28395224..28395248 (25 bp)
ACTTCGCACGTGTGGGCAGCTCGGC
LOC_Os11g48010
OsAffx.19437.1.S1_at--721--1911Chr11:28395217..28395241 (25 bp)
ACGTGTGGGCAGCTCGGCTGGAGAA
LOC_Os11g48010
OsAffx.19437.1.S1_at--681--8251Chr11:28395210..28395234 (25 bp)
GGCAGCTCGGCTGGAGAAGCGGCGG
LOC_Os11g48010
OsAffx.19437.1.S1_at--695--8371Chr11:28395156..28395180 (25 bp)
GGCGAAGGCGTCGTCAGACAAGCTC
LOC_Os11g48010
OsAffx.19437.1.S1_at--797--4591Chr11:28395155..28395179 (25 bp)
GCGAAGGCGTCGTCAGACAAGCTCA
LOC_Os11g48010
OsAffx.19437.1.S1_at--799--4011Chr11:28395148..28395172 (25 bp)
CGTCGTCAGACAAGCTCATGCGGAA
LOC_Os11g48010
OsAffx.19437.1.S1_at--433--7211Chr11:28395147..28395171 (25 bp)
GTCGTCAGACAAGCTCATGCGGAAG
LOC_Os11g48010
OsAffx.19437.1.S1_at--483--7111Chr11:28395144..28395168 (25 bp)
GTCAGACAAGCTCATGCGGAAGTTC
LOC_Os11g48010
OsAffx.19437.1.S1_at--791--1411Chr11:28395141..28395165 (25 bp)
AGACAAGCTCATGCGGAAGTTCACC
LOC_Os11g48010
OsAffx.19437.1.S1_at--98--6971Chr11:28395076..28395100 (25 bp)
GTAGCCTTGCGCTGCGGCGGAAGCA
LOC_Os11g48010
OsAffx.19437.1.S1_at--939--2711Chr11:28395056..28395080 (25 bp)
AAGCAGTCGTCCAGCAGGGTGGCAT
LOC_Os11g48010
Target Sequence 
ACTTCGCACGTGTGGGCAGCTCGGCTGGAGAAGCGGCGGCGGCGGGGGACGGTGTCCGTGCAGCACGTGGCGAAGGCGTC
GTCAGACAAGCTCATGCGGAAGTTCACCGACCCGGACGCGCACGCCAAGCAGATCACGCCGCCGCGCCGTAGCCTTGCGC
TGCGGCGGAAGCAGTCGTCCAGCAGGGTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis