Browse Element(s) Details


OsAffx.19442.1.S1_at

Description tigr:9640.m00029
TID=OsAffx.19442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ulp1 protease family, C-terminal catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0129011/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01240Os.6196.1.S1_x_at11/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01240Os.6196.2.S1_at9/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01250OsAffx.31536.1.S1_at10/1112+147185..152390hypothetical protein
LOC_Os12g01250Os.33915.1.S1_at1/1112+147185..152390hypothetical protein
LOC_Os12g01260Os.12962.1.S1_at11/1112+155438..156023Sec61beta family protein, expressed
LOC_Os12g01270Os.20602.2.S1_x_at10/1112+156852..159032hAT family dimerisation domain containing protein
LOC_Os12g01280OsAffx.19441.1.S1_at11/1112+159989..160258hypothetical protein
LOC_Os12g01290OsAffx.19442.1.S1_at11/1112+165056..168377Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g01300OsAffx.31537.1.S1_at11/1112+173691..174119hypothetical protein
LOC_Os12g01310OsAffx.7453.1.S1_at11/1112+176168..176876hypothetical protein
LOC_Os12g01320OsAffx.15141.3.S1_s_at1/1112+178539..184910retrotransposon protein, putative, unclassified
LOC_Os12g01330OsAffx.22699.1.S1_x_at1/1112+185658..188403retrotransposon protein, putative, unclassified
LOC_Os12g01340OsAffx.3761.1.S1_x_at1/1112+189607..192494hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19442.1.S1_at--1078--1291Chr12:167777..167801 (25 bp)
AGATGCAATCCTGGGCTATGCCTTG
LOC_Os12g01290
OsAffx.19442.1.S1_at--1144--1291Chr12:167825..167849 (25 bp)
AGATGATGGCCTACTCCTGGTGCAA
LOC_Os12g01290
OsAffx.19442.1.S1_at--662--7771Chr12:167843..167867 (25 bp)
GGTGCAACCAACGAACGCAGCATTG
LOC_Os12g01290
OsAffx.19442.1.S1_at--116--8871Chr12:167975..167999 (25 bp)
TGATGGGAAACACTGGAGCCTCTTA
LOC_Os12g01290
OsAffx.19442.1.S1_at--1096--8531Chr12:167988..168012 (25 bp)
TGGAGCCTCTTAGTCATCCACAAGA
LOC_Os12g01290
OsAffx.19442.1.S1_at--338--7431Chr12:168025..168049 (25 bp)
GTGTTATCCAGTTCATCCACCATGA
LOC_Os12g01290
OsAffx.19442.1.S1_at--403--7311Chr12:168120..168144 (25 bp)
GTGCTGCCCACTGCTGGAGATGTTA
LOC_Os12g01290
OsAffx.19442.1.S1_at--386--5551Chr12:168153..168177 (25 bp)
GAAACGCCCCAGCAGACTAATGGAA
LOC_Os12g01290
OsAffx.19442.1.S1_at--661--731Chr12:168193..168217 (25 bp)
ATGTTCTGGCTGCTGTACAGGTCAT
LOC_Os12g01290
OsAffx.19442.1.S1_at--407--2791Chr12:168246..168270 (25 bp)
AAGAGTGGCCCAGCTGATTGGATCA
LOC_Os12g01290
OsAffx.19442.1.S1_at--1085--2071Chr12:168301..168325 (25 bp)
ACATTACACAGATGAGGGCCTCCCT
LOC_Os12g01290
Target Sequence 
AGATGCAATCCTGGGCTATGCCTTGGCCAAATTTTCAAGAGCTTACTCAGATGATGGCCTACTCCTGGTGCAACCAACGA
ACGCAGCATTGCTGAACAATAAACACTATGTTGCTGCCGAGGCCGACCACTTGCTACTTGCTAGTCGTCGCCTGGTCCTC
ATACCAGTAAATGATAATCTGGATTTCAACCAAGCTGGTGATGGGAAACACTGGAGCCTCTTAGTCATCCACAAGACCAG
TAACGATGGTGTTATCCAGTTCATCCACCATGACAGTGTGCGTTCAGGGGATAACTCATACAATCTGCATGCTGCTCAAA
AGCTTGCAAATGTTCTGCGGGGAGTGCTGCCCACTGCTGGAGATGTTATTAACGCTGAAACGCCCCAGCAGACTAATGGA
AATGATTGCGCCATACATGTTCTGGCTGCTGTACAGGTCATATGCAGATGGTGGAGAGCCAATGCCAACAAGAGTGGCCC
AGCTGATTGGATCAGGAAATTGGACAAAAGAATCAGTGAAGGCAACATTACACAGATGAGGGCCTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis