Browse Element(s) Details


OsAffx.19461.1.S1_at

Description tigr:9640.m00205
TID=OsAffx.19461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0297011/11RNA recognition motif, putative, expressed
LOC_Os11g032206/11RNA recognition motif, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02910Os.24025.1.S1_s_at11/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02910Os.57150.1.S1_at8/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02920OsAffx.31556.1.S1_at11/1112+1080583..1081152hypothetical protein
LOC_Os12g02930OsAffx.31557.1.S1_at6/1112+1088401..1088841hypothetical protein
LOC_Os12g02930OsAffx.31558.1.S1_x_at1/1112+1088401..1088841hypothetical protein
LOC_Os12g02940OsAffx.31558.1.S1_x_at11/1112+1091580..1091984hypothetical protein
LOC_Os12g02940OsAffx.31557.1.S1_at1/1112+1091580..1091984hypothetical protein
LOC_Os12g02950Os.52945.1.S1_at11/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02950Os.52764.1.S1_x_at3/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02960OsAffx.19460.1.S1_at11/1112+1096484..1097350Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os12g02970OsAffx.19461.1.S1_at11/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_x_at7/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_at2/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02980Os.11718.1.S1_at11/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.11908.1.S1_s_at4/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.1.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.2.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02990OsAffx.7467.1.S1_at11/1112+1111362..1111955hypothetical protein
LOC_Os12g03000Os.31312.2.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified
LOC_Os12g03000Os.31312.5.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified
LOC_Os12g03010NANA12+1119567..1125722retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19461.1.S1_at--510--7631Chr12:1099032..1099056 (25 bp)
GGGACATTGCTAGTCATGAGGCATC
LOC_Os12g02970
OsAffx.19461.1.S1_at--1--3692Chr12:1099023..1099047 (25 bp)
CTAGTCATGAGGCATCTTTTAGGAT
LOC_Os12g02970
OsAffx.19461.1.S1_at--776--8972Chr12:1098989..1099013 (25 bp)
TGAACAACAACATGCGACCGAGCTG
LOC_Os12g02970
OsAffx.19461.1.S1_at--305--611Chr12:1098978..1099002 (25 bp)
ATGCGACCGAGCTGCAACGCTGTTG
LOC_Os12g02970
OsAffx.19461.1.S1_at--194--2611Chr12:1098963..1098987 (25 bp)
AACGCTGTTGCTTAATGAGGCTTCC
LOC_Os12g02970
OsAffx.19461.1.S1_at--1013--10492Chr12:1098952..1098976 (25 bp)
TTAATGAGGCTTCCGCTTCTCAATC
LOC_Os12g02970
OsAffx.19461.1.S1_at--72--10672Chr12:1098942..1098966 (25 bp)
TTCCGCTTCTCAATCTTCAGGATTG
LOC_Os12g02970
OsAffx.19461.1.S1_at--225--9672Chr12:1098906..1098930 (25 bp)
TCAGCTCTCCCATGGGTTCACATGT
LOC_Os12g02970
OsAffx.19461.1.S1_at--372--7892Chr12:1098892..1098916 (25 bp)
GGTTCACATGTGCTTCTAGGACAAG
LOC_Os12g02970
OsAffx.19461.1.S1_at--690--671Chr12:1098840..1098864 (25 bp)
ATGACAATCCCACTCATTTGGAGGA
LOC_Os12g02970
OsAffx.19461.1.S1_at--56--8031Chr12:1098826..1098845 (20 bp)
GGAGGATGTCACATTTCGAGACAAT
LOC_Os12g02970
Target Sequence 
GGGACATTGCTAGTCATGAGGCATCTTTTAGGATGAAGCAAGATGAACAACAACATGCGACCGAGCTGCAACGCTGTTGC
TTAATGAGGCTTCCGCTTCTCAATCTTCAGGATTGGGGCCATCATCTCAGCTCTCCCATGGGTTCACATGTGCTTCTAGG
ACAAGTTGATAACAAATATAATATTAATGAGAATGACAATCCCACTCATTTGGAGGATGTCACATTTCGAGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis