Browse Element(s) Details


OsAffx.19484.1.S1_at

Description tigr:9640.m00343
TID=OsAffx.19484.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0451011/11hypothetical protein
LOC_Os12g0428011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04470OsAffx.18662.1.S1_at11/1111+1864568..1865996hypothetical protein
LOC_Os11g04470OsAffx.10096.1.S1_x_at1/1111+1864568..1865996hypothetical protein
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04490Os.26862.3.S1_a_at11/1111+1878361..1880910saccharopine dehydrogenase family protein, expressed
LOC_Os11g04500Os.5332.1.S1_at9/1111+1882964..1886469Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os11g04510OsAffx.19484.1.S1_at11/1111+1890538..1891459hypothetical protein
LOC_Os11g04520Os.26409.3.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.1.S1_a_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.2.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04530OsAffx.31574.2.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.31574.1.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.19485.1.S1_at1/1111+1898425..1901445Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19484.1.S1_at--467--8992Chr12:1814209..1814233 (25 bp)
TGCAAAGGCTAGATTCTGGGCTAAT
LOC_Os12g04280
OsAffx.19484.1.S1_at--452--10532Chr12:1814248..1814272 (25 bp)
TTCAGACATATCTTTGCCAGACCCT
LOC_Os12g04280
OsAffx.19484.1.S1_at--837--9192Chr12:1814262..1814286 (25 bp)
TGCCAGACCCTGATATGTATATTGA
LOC_Os12g04280
OsAffx.19484.1.S1_at--198--8932Chr12:1814293..1814317 (25 bp)
TGACCACAATAGCAAGATCGACCCT
LOC_Os12g04280
OsAffx.19484.1.S1_at--879--5812Chr12:1814312..1814336 (25 bp)
GACCCTGAGTTGATAGCTGACCTGA
LOC_Os12g04280
OsAffx.19484.1.S1_at--782--7992Chr12:1814362..1814386 (25 bp)
GGATGATGAGTTACTCCCAGCTGAT
LOC_Os12g04280
OsAffx.19484.1.S1_at--111--9332Chr12:1814376..1814400 (25 bp)
TCCCAGCTGATGGATTGGGCAGCAC
LOC_Os12g04280
OsAffx.19484.1.S1_at--865--6472Chr12:1814402..1814426 (25 bp)
GATACAGATAACAAGTGCCAGCAGA
LOC_Os12g04280
OsAffx.19484.1.S1_at--404--7632Chr12:1814448..1814472 (25 bp)
GGGACATCTATGTAGAAAAGCCCAC
LOC_Os12g04280
OsAffx.19484.1.S1_at--440--5172Chr12:1814491..1814515 (25 bp)
GCAAGATTCAAGATCCAACATGGAC
LOC_Os12g04280
OsAffx.19484.1.S1_at--79--2493Chr12:1814960..1814984 (25 bp)
AACAGGAATAGATACCAGGACCCAA
NONE
Target Sequence 
TGCAAAGGCTAGATTCTGGGCTAATTACCATGGNCAACCTTCAGACATATCTTTGCCAGACCCTGATATGTATATTGACA
AGNTTGACCACAATAGCAAGATCGACCCTGAGTTGATAGCTGACCTGAANATGGTACGNTTACCATTCGAGANGGATGAT
GAGTTACTCCCAGCTGATGGATTGGGCAGCACTGATACAGATAACAAGTGCCAGCAGANGCAGAACCAATCTNGAAACTG
GGACATCTATGTAGAAAAGCCCACNGAAGTTAACAAGTGGGAGCAAGATTCAAGATCCAACATGGACTGGGGAACAAAGC
ATGAATCTTGGAATGANTGGAGTAAAAATTGCTCTGGTTGGGGTAGTGCCTTGGCGGATTCTAGTNNNNNNNNNNNNNNN
NNNTGGGGCAATTGGAATAATAGTAACAATCATCATTCATCAAATAACAGGGNTAGCTTCAATGGGNTCAACAGGAATAG
ATACCAGGACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis