Browse Element(s) Details


OsAffx.19490.1.S1_at

Description tigr:9639.m00380
TID=OsAffx.19490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0468011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g044502/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04630OsAffx.30818.1.S1_at11/1111+1969409..1970622hypothetical protein
LOC_Os11g04640OsAffx.19542.3.S1_x_at3/1111+1973199..1977421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g04650NANA11+1980525..1981824hypothetical protein
LOC_Os11g04660Os.5263.1.S1_at11/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.1.S1_x_at10/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.2.S1_x_at6/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04670Os.11248.1.S1_at10/1111+1985059..19909422-isopropylmalate synthase B, putative, expressed
LOC_Os11g04680OsAffx.19490.1.S1_at11/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04680OsAffx.19490.2.S1_at1/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04690OsAffx.18669.1.S1_at11/1111+1994648..1995343Zinc finger, C3HC4 type family protein
LOC_Os11g04700OsAffx.31577.1.S1_s_at11/1111+1997078..2000551expressed protein
LOC_Os11g04700OsAffx.31577.2.S1_at1/1111+1997078..2000551expressed protein
LOC_Os11g04710Os.23206.1.S1_at10/1111+2002827..2005916Cytochrome P450 family protein, expressed
LOC_Os11g04720Os.37430.1.S1_at11/1111+2009238..2011255Two-component response regulator ARR8, putative, expressed
LOC_Os11g04730Os.9249.1.S1_at9/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04730Os.37965.1.S1_at1/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04740Os.18691.1.S1_at11/1111+2015624..2020065L-galactono-1,4-lactone dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19490.1.S1_at--485--3531Chr11:1991619..1991643 (25 bp)
CATCGTTAGCCTGCCGGAGATGGCC
LOC_Os11g04680
OsAffx.19490.1.S1_at--6--3831Chr11:1992827..1992851 (25 bp)
CTGCCAGTGCCAGAGACGACGGTGA
LOC_Os11g04680
OsAffx.19490.1.S1_at--528--8011Chr11:1992871..1992895 (25 bp)
GGAGGAAGCATGTGCAGTTTGCCTA
LOC_Os11g04680
OsAffx.19490.1.S1_at--763--7332Chr12:1896505..1896524 (20 bp)
GTGCAGTTTGCCTAGAGGGATTTAA
LOC_Os12g04450
OsAffx.19490.1.S1_at--34--7771Chr11:1992911..1992935 (25 bp)
GGTGACAGAGTCAAGAAGATGCCTT
LOC_Os11g04680
OsAffx.19490.1.S1_at--88--2752Chr12:1896541..1896565 (25 bp)
AAGAAGATGCCTTGCTCTCATGACT
LOC_Os12g04450
OsAffx.19490.1.S1_at--319--10731Chr11:1992934..1992958 (25 bp)
TTGCTCTCATGACTTCCACGCGAAT
LOC_Os11g04680
OsAffx.19490.1.S1_at--363--10691Chr11:1992947..1992971 (25 bp)
TTCCACGCGAATTGCATCTCTGAAT
LOC_Os11g04680
OsAffx.19490.1.S1_at--739--9051Chr11:1992959..1992983 (25 bp)
TGCATCTCTGAATGGCTTAGGGTGA
LOC_Os11g04680
OsAffx.19490.1.S1_at--355--2911Chr11:1992969..1992993 (25 bp)
AATGGCTTAGGGTGAGCCGCCTCTG
LOC_Os11g04680
OsAffx.19490.1.S1_at--836--10391Chr11:1993006..1993030 (25 bp)
TTTTGCTCTGCCTGCTGAGAGGGAT
LOC_Os11g04680
Target Sequence 
CATCGTTAGCCTGCCGGAGATGGCCGTCGGCTGCGGCTGCGGCGGCGGCGGCGAGGCGAGGGAGAAGGAGTGCGGGGTGT
GTCTAGAGGGGTTCGAGGAGGGTGAAAAGCTCAGGAAGATGCCATGCGAGCACTACTTCCATGAGAGCTGCGTTTTCAAA
TGGCTTCAGGGGCCGAGCTACGTTCCACACGGTGTTGAATCAGCATACATCCACATCAATCGTGATATCGAAGAAGATGA
CGACACGTACAGTGATGACGGGTTCTGCGCCGTCCCGGCCTCCAGCGACGCCATCGCTGCGCTGCCAGTGCCAGAGACGA
CGGTGAGTGAGACCGAGACGAGGGAGGAGGAAGCATGTGCAGTTTGCCTAGAGGGATTTAAGGAGGGTGACAGAGTCAAG
AAGATGCCTTGCTCTCATGACTTCCACGCGAATTGCATCTCTGAATGGCTTAGGGTGAGCCGCCTCTGTCCACACTGCCG
TTTTGCTCTGCCTGCTGAGAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis