Browse Element(s) Details


OsAffx.19501.1.S1_x_at

Description tigr:9640.m00428
TID=OsAffx.19501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0507011/11expressed protein
LOC_Os04g533602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05050Os.7801.1.S1_at11/1112+2214870..2218478Stem-specific protein TSJT1, putative, expressed
LOC_Os12g05060Os.57385.1.S1_at11/1112+2226382..2227895expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_x_at11/1112+2228140..2228805expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_at11/1112+2228140..2228805expressed protein
LOC_Os12g05080Os.12064.1.S1_at11/1112+2230443..2233876expressed protein
LOC_Os12g05090Os.52139.1.S1_at11/1112+2235082..2238401peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os12g05100OsAffx.19502.1.S1_at10/1112+2240328..2243608hypothetical protein
LOC_Os12g05110Os.28109.1.S1_at11/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05110Os.18503.1.S1_at1/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05120Os.26353.1.S2_a_at11/1112+2250186..2253075Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19501.1.S1_x_at--1156--4171Chr12:2228329..2228353 (25 bp)
CCCTCTGCCGAAATCGATTTCGAGG
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--84--2252Chr12:2228339..2228363 (25 bp)
AAATCGATTTCGAGGGCGACGGCGA
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--814--2352Chr12:2228406..2228430 (25 bp)
AAAGCGTTATGAGGCTCCCGATGCG
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--507--5631Chr12:2228458..2228482 (25 bp)
GACAGCGACGGCGATAAGGAGCGCC
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--858--8371Chr12:2228498..2228522 (25 bp)
GGCGAAGTTATGAGGCTCCCAACGT
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--30--5331Chr12:2228501..2228525 (25 bp)
GAAGTTATGAGGCTCCCAACGTACC
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--1076--1191Chr12:2228503..2228527 (25 bp)
AGTTATGAGGCTCCCAACGTACCCT
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--496--10571Chr12:2228530..2228554 (25 bp)
TTCTCCCTCGGTATTAACTCTGATG
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--455--4191Chr12:2228534..2228558 (25 bp)
CCCTCGGTATTAACTCTGATGGCGG
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--319--3971Chr12:2228538..2228562 (25 bp)
CGGTATTAACTCTGATGGCGGCGAC
LOC_Os12g05070
OsAffx.19501.1.S1_x_at--511--10191Chr12:2228541..2228565 (25 bp)
TATTAACTCTGATGGCGGCGACCCG
LOC_Os12g05070
Target Sequence 
CCCTCTGCCGAAATCGATTTCGAGGGCGACGGCGACGAGTCCCACCTCACCGACGGCGGCAATGGAGGGGAGGAACAAAA
GCGTTATGAGGCTCCCGATGCGCCATCCTTCTTTCTCGGCATCGACTCCGACAGCGACGGCGATAAGGAGCGCCGCCGGG
AGGAGCAACGGCGAAGTTATGAGGCTCCCAACGTACCCTCCTTCTCCCTCGGTATTAACTCTGATGGCGGCGACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19501.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis