Browse Element(s) Details


OsAffx.19528.1.S1_at

Description tigr:9640.m00662
TID=OsAffx.19528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0734010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07290Os.27585.1.S1_at11/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07290OsAffx.27834.1.S1_at1/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07300Os.10295.1.S1_at5/1112+3590141..3596478expressed protein
LOC_Os12g07310Os.17271.1.S1_at10/1112+3601557..3604026Citrate binding protein precursor, putative, expressed
LOC_Os12g07319NANA12+3606230..3606421NA
LOC_Os12g07328NANA12+3608576..3608863NA
LOC_Os12g07340OsAffx.19528.1.S1_at10/1112+3610357..3612148hypothetical protein
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19528.1.S1_at--25--8851Chr12:3610421..3610445 (25 bp)
TGAGGCTGGGCGAGAGGAACTTCCA
LOC_Os12g07340
OsAffx.19528.1.S1_at--150--5111Chr12:3610550..3610574 (25 bp)
GCAAAACCAAACCAAGGACGGAGAT
LOC_Os12g07340
OsAffx.19528.1.S1_at--964--6431NONE
GATCAGGATGACGAAGCTATCTGCG
NONE
OsAffx.19528.1.S1_at--243--1576Chr12:3611979..3612003 (25 bp)
AGCTATCTGCGCGTCGGCTGCTGCG
LOC_Os12g07340
OsAffx.19528.1.S1_at--107--9151Chr12:3612000..3612024 (25 bp)
TGCGTGGGGTCTATCAGATCATGCG
LOC_Os12g07340
OsAffx.19528.1.S1_at--87--7272Chr12:3612029..3612053 (25 bp)
GTCCTTGTCATTCGCCGTTTAATGG
LOC_Os12g07340
OsAffx.19528.1.S1_at--1155--10491Chr12:3612047..3612071 (25 bp)
TTAATGGTTGAGGACTTCCAGGTTC
LOC_Os12g07340
OsAffx.19528.1.S1_at--701--9231Chr12:3612063..3612087 (25 bp)
TCCAGGTTCCTGTTCACACCAGGAA
LOC_Os12g07340
OsAffx.19528.1.S1_at--488--4311Chr12:3612081..3612105 (25 bp)
CCAGGAAACAGATACCCGGGTCAGT
LOC_Os12g07340
OsAffx.19528.1.S1_at--105--2133Chr12:3612088..3612112 (25 bp)
ACAGATACCCGGGTCAGTTCAGAGT
LOC_Os12g07340
OsAffx.19528.1.S1_at--446--99534Chr12:3612093..3612117 (25 bp)
TACCCGGGTCAGTTCAGAGTGGTTG
LOC_Os12g07340
Target Sequence 
TGAGGCTGGGCGAGAGGAACTTCCAGCTGCAGTGGCCGTACGACGTGAAGAACAGCTCGAGGTACAGCTTCGACGGAACG
GTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCCCACACGCCGCGGAGCAAAACCAAACCAAGGACGGAGATCAGGAT
GACGAAGCTATCTGCGCGTCGGCTGCTGCGTGGGGTCTATCAGATCATGCGGGGCGTCCTTGTCATTCGCCGTTTAATGG
TTGAGGACTTCCAGGTTCCTGTTCACACCAGGAAACAGATACCCGGGTCAGTTCAGAGTGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis