Browse Element(s) Details


OsAffx.19530.1.S1_at

Description tigr:9640.m00669
TID=OsAffx.19530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0740011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein
LOC_Os12g07410OsAffx.19531.1.S1_at11/1112+3657273..3658295hypothetical protein
LOC_Os12g07420OsAffx.7512.1.S1_at11/1112+3661130..3661579hypothetical protein
LOC_Os12g07430OsAffx.31632.1.S1_at10/1112+3663522..3664234hypothetical protein
LOC_Os12g07430OsAffx.25932.1.S1_at6/1112+3663522..3664234hypothetical protein
LOC_Os12g07440OsAffx.7513.1.S1_at11/1112+3667705..3669772hypothetical protein
LOC_Os12g07450Os.11721.1.S1_at11/1112+3671806..3678298transducin family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19530.1.S1_at--370--9491Chr12:3649908..3649932 (25 bp)
TCACCCCTACGGTACGGGCACGAGA
LOC_Os12g07400
OsAffx.19530.1.S1_at--935--1494Chr12:3649990..3650014 (25 bp)
AGCACAGGACTGTTCGAGCTGGGCC
LOC_Os12g07400
OsAffx.19530.1.S1_at--1137--5711Chr12:3650063..3650087 (25 bp)
GACTGTTCGAGCTGGTCAATTACCG
LOC_Os12g07400
OsAffx.19530.1.S1_at--892--4071Chr12:3650070..3650094 (25 bp)
CGAGCTGGTCAATTACCGGATTTGG
LOC_Os12g07400
OsAffx.19530.1.S1_at--982--9612Chr12:3650112..3650136 (25 bp)
TCATGCGGGCACGAGACTGTTCGAG
LOC_Os12g07400
OsAffx.19530.1.S1_at--437--5731Chr12:3650126..3650150 (25 bp)
GACTGTTCGAGATGTTACAGGCTGA
LOC_Os12g07400
OsAffx.19530.1.S1_at--8--2793Chr12:3650155..3650179 (25 bp)
AAGAGAAGGCCAGGCACAGGACTGT
LOC_Os12g07400
OsAffx.19530.1.S1_at--397--8051Chr12:3650287..3650311 (25 bp)
GGAGATAGGCCAAGCAAAGGACTGT
LOC_Os12g07400
OsAffx.19530.1.S1_at--491--2314Chr12:3650302..3650326 (25 bp)
AAAGGACTGTTCGAGCTGGGCCTAC
LOC_Os12g07400
OsAffx.19530.1.S1_at--609--4391Chr12:3650359..3650383 (25 bp)
GCCAAGCAGATAGAAGCAGCGGACT
LOC_Os12g07400
OsAffx.19530.1.S1_at--911--3831Chr12:3650382..3650406 (25 bp)
CTGCTCTAGGACTAAATCTGAAAAT
LOC_Os12g07400
Target Sequence 
TCACCCCTACGGTACGGGCACGAGACTGTTCGAGATGGGCCTACAGCTACACTTACGGGCTGAGCCGAAGAGAGGTAGGC
CAAGCACAGGACTGTTCGAGCTGGGCCTACAGCTCCACTTGCGGGCTGAGCCAAAGAGAGGTAGGGCAGGCACAGGACTG
TTCGAGCTGGTCAATTACCGGATTTGGTGGGAGGATCGGCTCCGTCATGCGGGCACGAGACTGTTCGAGATGTTACAGGC
TGAGCCGAAGAGAAGGCCAGGCACAGGACTGTTCGAGCTGGGCCTACAGCTCCACTTGCGGGCTGAGCCAAAGAGAGGTA
GGCCAGGCACAGGACTGTTCGAGCTGGGCCTACAGCTTCACTTGTGGGCTGAGCCGAAGGGAGATAGGCCAAGCAAAGGA
CTGTTCGAGCTGGGCCTACAGCTCCACTTGTGGGCTGAGCCGAAGAGAGAGGCCAAGCAGATAGAAGCAGCGGACTGCTC
TAGGACTAAATCTGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis