Browse Element(s) Details


OsAffx.19584.1.S1_at

Description tigr:9640.m00954
TID=OsAffx.19584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 161380 O-methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1017011/11O-methyltransferase family protein, expressed
LOC_Os12g097702/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10110OsAffx.17420.1.S1_at1/1112+5348232..5349218retrotransposon protein, putative, unclassified
LOC_Os12g10120OsAffx.32051.1.S1_x_at1/1112+5355356..5355805hypothetical protein
LOC_Os12g10130NANA12+5356646..5358682retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10140OsAffx.31676.1.S1_at11/1112+5363419..5364800O-methyltransferase family protein
LOC_Os12g10150NANA12+5368912..5369148hypothetical protein
LOC_Os12g10160NANA12+5370262..5371146hypothetical protein
LOC_Os12g10170OsAffx.19584.1.S1_at11/1112+5373910..5374727O-methyltransferase family protein, expressed
LOC_Os12g10180OsAffx.19585.1.S1_at11/1112+5375855..5382028NB-ARC domain containing protein, expressed
LOC_Os12g10190Os.49409.1.S1_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190Os.49409.1.S1_s_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190OsAffx.19586.1.S1_at2/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10200Os.39074.1.A1_at11/1112+5390908..5393891expressed protein
LOC_Os12g10210NANA12+5394889..5395308hypothetical protein
LOC_Os12g10220Os.51603.1.S1_at11/1112+5398038..5400311expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19584.1.S1_at--355--6431Chr12:5374499..5374523 (25 bp)
GATCATTGTGGATGGTCTCCTGCCG
LOC_Os12g10170
OsAffx.19584.1.S1_at--795--8551Chr12:5374507..5374531 (25 bp)
TGGATGGTCTCCTGCCGGAGACCCC
LOC_Os12g10170
OsAffx.19584.1.S1_at--471--4371Chr12:5374530..5374554 (25 bp)
CCAAATACTAGTCCAGCTGCACGGG
LOC_Os12g10170
OsAffx.19584.1.S1_at--525--3091Chr12:5374533..5374557 (25 bp)
AATACTAGTCCAGCTGCACGGGATT
LOC_Os12g10170
OsAffx.19584.1.S1_at--1066--9891Chr12:5374535..5374559 (25 bp)
TACTAGTCCAGCTGCACGGGATTCA
LOC_Os12g10170
OsAffx.19584.1.S1_at--626--9551Chr12:5374588..5374612 (25 bp)
TCTTCAAGGTAGGAAAACAGAGGAC
LOC_Os12g10170
OsAffx.19584.1.S1_at--1079--2471Chr12:5374603..5374627 (25 bp)
AACAGAGGACGGAGCAAGAGTTTGC
LOC_Os12g10170
OsAffx.19584.1.S1_at--143--5931Chr12:5374656..5374680 (25 bp)
GGTACCTTTCGGTCGACCTACATAT
LOC_Os12g10170
OsAffx.19584.1.S1_at--1000--10291Chr12:5374662..5374686 (25 bp)
TTTCGGTCGACCTACATATTCTTGA
LOC_Os12g10170
OsAffx.19584.1.S1_at--179--7812Chr12:5374666..5374690 (25 bp)
GGTCGACCTACATATTCTTGAACTT
LOC_Os12g10170
OsAffx.19584.1.S1_at--460--3732Chr12:5374673..5374697 (25 bp)
CTACATATTCTTGAACTTCTATGCT
LOC_Os12g10170
Target Sequence 
GATCATTGTGGATGGTCTCCTGCCGGAGACCCCAAATACTAGTCCAGCTGCACGGGATTCATTCACCATGGATATGATCA
TGTTTGTCCTCTTCAAGGTAGGAAAACAGAGGACGGAGCAAGAGTTTGCAAAGCTTGCCAAGGAAGCTGGCTTTACCGGT
ACCTTTCGGTCGACCTACATATTCTTGAACTTCTATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis