Browse Element(s) Details


OsAffx.19609.1.S1_at

Description tigr:9640.m01065
TID=OsAffx.19609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1122011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11190NANA12+6027279..6028277retrotransposon protein, putative, unclassified
LOC_Os12g11200NANA12+6028892..6031875hypothetical protein
LOC_Os12g11210Os.45976.1.S1_x_at2/1112+6035199..6045804transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11210Os.46306.1.S1_x_at2/1112+6035199..6045804transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11220OsAffx.19609.1.S1_at11/1112+6050369..6050962hypothetical protein
LOC_Os12g11230Os.10827.1.S1_x_at11/1112+6054284..6057571transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11230Os.46055.2.S1_x_at5/1112+6054284..6057571transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11240OsAffx.17922.1.S1_x_at5/1112+6058657..6061769hypothetical protein
LOC_Os12g11240Os.9100.1.S3_at2/1112+6058657..6061769hypothetical protein
LOC_Os12g11250Os.19439.2.S1_at11/1112+6062051..6063343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.1.S1_s_at11/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.7.S1_s_at11/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.1.S1_at7/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.2.S1_x_at5/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.5.S1_x_at2/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11270OsAffx.31699.1.S1_at11/1112+6071780..6072255hypothetical protein
LOC_Os12g11280OsAffx.31700.1.S1_at11/1112+6073580..6074221hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19609.1.S1_at--585--4132Chr12:6050399..6050423 (25 bp)
CGCTCTCTCGAGCGCAGCAGCAGAG
LOC_Os12g11220
OsAffx.19609.1.S1_at--1087--1372Chr12:6050420..6050444 (25 bp)
AGAGCCGCGCCGTTTCCTCCGAGGG
LOC_Os12g11220
OsAffx.19609.1.S1_at--705--4191Chr12:6050429..6050453 (25 bp)
CCGTTTCCTCCGAGGGAAGCAGCAG
LOC_Os12g11220
OsAffx.19609.1.S1_at--451--4131Chr12:6050577..6050601 (25 bp)
CGCTCCGTTTCTCCGCGCGTAGGAA
LOC_Os12g11220
OsAffx.19609.1.S1_at--104--10291Chr12:6050584..6050608 (25 bp)
TTTCTCCGCGCGTAGGAACCGCCGT
LOC_Os12g11220
OsAffx.19609.1.S1_at--461--5051Chr12:6050610..6050634 (25 bp)
GCAGCTCCCTTTTTCCGGAAGCAGC
LOC_Os12g11220
OsAffx.19609.1.S1_at--540--5391Chr12:6050627..6050651 (25 bp)
GAAGCAGCAACCGTCGCCACTGCTG
LOC_Os12g11220
OsAffx.19609.1.S1_at--730--9111Chr12:6050647..6050671 (25 bp)
TGCTGCTTCCTTTCTCCGCGTGTAT
LOC_Os12g11220
OsAffx.19609.1.S1_at--767--3671Chr12:6050656..6050680 (25 bp)
CTTTCTCCGCGTGTATCATCAGCTG
LOC_Os12g11220
OsAffx.19609.1.S1_at--1095--10791Chr12:6050728..6050752 (25 bp)
TTGTGACCGTGCGACGCTCAGTGGC
LOC_Os12g11220
OsAffx.19609.1.S1_at--329--8491Chr12:6050807..6050831 (25 bp)
TGGCTGGCAGCGTTGTACCGCAGGA
LOC_Os12g11220
Target Sequence 
CGCTCTCTCGAGCGCAGCAGCAGAGCCGCGCCGTTTCCTCCGAGGGAAGCAGCAGCCGCCGCTGCCAACGCCGCTCCCTC
GAGCGCAGCCGCCGCTGCTACCTTCGCGCTGCCGTTACCGCGCACCGGAACACGTGCGACGCTCCTTCCGCACGGAGCAC
CCTCTGCGCCACCATCGCCGCTCCGTTTCTCCGCGCGTAGGAACCGCCGTCGCAGCTCCCTTTTTCCGGAAGCAGCAACC
GTCGCCACTGCTGCTTCCTTTCTCCGCGTGTATCATCAGCTGCTCCGTCGCCACCACTCCCTCCCTCCACAAGTTTCCGC
CGCGCCGCCTTGTGACCGTGCGACGCTCAGTGGCGGCGCCGGCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGC
GGGTGCGGTGGCTGGCAGCGTTGTACCGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis