Browse Element(s) Details


OsAffx.19639.1.S1_at

Description tigr:9640.m01265
TID=OsAffx.19639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=selenium-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1311011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13080Os.39476.1.S1_at7/1112+7262472..7264668transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13090OsAffx.19638.1.S1_at11/1112+7274170..7274674hypothetical protein
LOC_Os12g13100Os.18645.1.S1_at10/1112+7283434..7284983WW domain containing protein, expressed
LOC_Os12g13110OsAffx.19639.1.S1_at11/1112+7286621..7289146pentatricopeptide, putative, expressed
LOC_Os12g13120Os.50753.1.S1_at11/1112+7290814..7298557histidine triad family protein, putative, expressed
LOC_Os12g13130Os.27233.1.S1_at10/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13130OsAffx.7575.3.S1_x_at9/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13140OsAffx.19640.1.S1_at11/1112+7311928..7312826hypothetical protein
LOC_Os12g13150Os.50761.1.S1_at11/1112+7313271..7324855expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19639.1.S1_at--209--5431Chr12:7287589..7287613 (25 bp)
GAACCCAGGGTAGAACATTATGCAT
LOC_Os12g13110
OsAffx.19639.1.S1_at--690--9791Chr12:7287410..7287434 (25 bp)
TAAGCTTGTAGAACTGGATCCTTCA
LOC_Os12g13110
OsAffx.19639.1.S1_at--281--7971Chr12:7287395..7287419 (25 bp)
GGATCCTTCAGACAGTGGAATCTAT
LOC_Os12g13110
OsAffx.19639.1.S1_at--771--8211Chr12:7287379..7287403 (25 bp)
GGAATCTATGTACTTATGAGCCAAA
LOC_Os12g13110
OsAffx.19639.1.S1_at--642--5371Chr12:7287284..7287308 (25 bp)
GAAGAATCCTGGCTGTAGCTCTATC
LOC_Os12g13110
OsAffx.19639.1.S1_at--1158--8331Chr12:7287274..7287298 (25 bp)
GGCTGTAGCTCTATCGAGGTCGAAG
LOC_Os12g13110
OsAffx.19639.1.S1_at--1017--2231Chr12:7287247..7287271 (25 bp)
AAATTCCACGACTTTTTGGTGGCAG
LOC_Os12g13110
OsAffx.19639.1.S1_at--484--7531Chr12:7287229..7287253 (25 bp)
GTGGCAGATGTTTCACATGCATGTT
LOC_Os12g13110
OsAffx.19639.1.S1_at--335--8171Chr12:7286781..7286805 (25 bp)
GGAACTTGATTGAACCCAGGTTTCT
LOC_Os12g13110
OsAffx.19639.1.S1_at--727--2391Chr12:7286667..7286757 (25 bp)
AAACTACAGTTTTAGATGGCATTGC
LOC_Os12g13110
OsAffx.19639.1.S1_at--726--6231Chr12:7286653..7286677 (25 bp)
GATGGCATTGCTACGGAGCTTTTAC
LOC_Os12g13110
Target Sequence 
GAACCCAGGGTAGAACATTATGCATGCATGATTGATCTTTTGGGTAAAGTTGGGCTTCTGGAAGAGGCATTTGAAGTTGC
AAGGGGTATGCCGATGGAAGCTGATGAGGCTGGTTGGGGTGCTCTTCTAAATGCATGCAGAATGCATGGGAATGTAGAGA
TTGGTGCATGTGTTGCAGATAAGCTTGTAGAACTGGATCCTTCAGACAGTGGAATCTATGTACTTATGAGCCAAATATAT
GCAAGTAAAAATAAATGGGATCAGGTGAAGATGCTGAGAATGACGATGAGAGATAGAGGGGTAAAGAAGAATCCTGGCTG
TAGCTCTATCGAGGTCGAAGGAAAATTCCACGACTTTTTGGTGGCAGATGTTTCACATGCATGTTCAGAAGAAATCTATT
CAGCATTGAAGAATATTTACTTCCATTTAAAACAGGAAGATATGTCATGGCAAGGAACTATAGGGAACTTGATTGAACCC
AGGTTTCTTTCTTTTCCTTTTTCTTATAAACAAACTACAGTTTTAGATGGCATTGCTACGGAGCTTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis