Browse Element(s) Details


OsAffx.19700.1.S1_at

Description tigr:9640.m01578
TID=OsAffx.19700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1619011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16160OsAffx.31759.1.S1_at10/1112+9227564..9228751CCT motif family protein
LOC_Os12g16170OsAffx.31760.1.S1_at11/1112+9234378..9235199hypothetical protein
LOC_Os12g16180Os.52925.1.S1_at11/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16180Os.4506.3.S1_x_at1/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16190OsAffx.19700.1.S1_at11/1112+9252367..9253584hypothetical protein
LOC_Os12g16200Os.7101.1.S1_at11/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200OsAffx.10222.1.S1_x_at2/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200Os.51841.1.S1_x_at1/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16210Os.54139.1.S1_at11/1112+9271502..9274409DHHC zinc finger domain containing protein, expressed
LOC_Os12g16220Os.17641.1.S1_at10/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_x_at2/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.14533.1.S1_a_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_s_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19700.1.S1_at--228--4831Chr12:9252825..9252849 (25 bp)
GCTCATTGGAGCTCTTTTCTTTTAT
LOC_Os12g16190
OsAffx.19700.1.S1_at--1152--6751Chr12:9252891..9252915 (25 bp)
GTTAAGCGCGCTCATTGCAGCGAAA
LOC_Os12g16190
OsAffx.19700.1.S1_at--668--7331Chr12:9252917..9252941 (25 bp)
GTGCATGCTACCGTGTGCACGGGAT
LOC_Os12g16190
OsAffx.19700.1.S1_at--221--871Chr12:9252940..9252964 (25 bp)
ATGGCGACGGGCTACTGTCACGGCT
LOC_Os12g16190
OsAffx.19700.1.S1_at--313--3871Chr12:9252954..9252978 (25 bp)
CTGTCACGGCTGTAGGTGTCAACGA
LOC_Os12g16190
OsAffx.19700.1.S1_at--326--7451Chr12:9252969..9252993 (25 bp)
GTGTCAACGATGCTCGTCGCGGCCA
LOC_Os12g16190
OsAffx.19700.1.S1_at--280--4051Chr12:9253055..9253378 (25 bp)
CGATGCAACGGCGATTTATAGACAT
LOC_Os12g16190
OsAffx.19700.1.S1_at--85--2871Chr12:9253379..9253403 (25 bp)
AAGTGACACCTTCGCTCAAGTTGAA
LOC_Os12g16190
OsAffx.19700.1.S1_at--600--8091Chr12:9253404..9253428 (25 bp)
GGACCAACCATAAATTTTACTCTTG
LOC_Os12g16190
OsAffx.19700.1.S1_at--511--2991Chr12:9253440..9253464 (25 bp)
AATGATCTTCCACAAAATCTGTATG
LOC_Os12g16190
OsAffx.19700.1.S1_at--835--3051Chr12:9253455..9253479 (25 bp)
AATCTGTATGGAATTCGGAAGCTTA
LOC_Os12g16190
Target Sequence 
GCTCATTGGAGCTCTTTTCTTTTATTTTGCTTTTCTTCCTCTTCTTCATCTTCTTCTCTCCTTCCCGTTAAGCGCGCTCA
TTGCAGCGAAACGTGCATGCTACCGTGTGCACGGGATGGCGACGGGCTACTGTCACGGCTGTAGGTGTCAACGATGCTCG
TCGCGGCCATCGCGGGACCGGGACGGCGTGGCTTGGGCGCCGCTGCAGCACGCGGCTGGTGAGGCTCCGCCGATGCAACG
GCGATTTATAGACATAAGTGACACCTTCGCTCAAGTTGAAGGACCAACCATAAATTTTACTCTTGATAGAGAATTAAATG
ATCTTCCACAAAATCTGTATGGAATTCGGAAGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis