Browse Element(s) Details


OsAffx.19720.2.S1_at

Description tigr:9637.m00815
TID=OsAffx.19720.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1055010/11hypothetical protein
LOC_Os12g176904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10520OsAffx.17633.1.S1_at10/119+5733833..5734254hypothetical protein
LOC_Os09g10530OsAffx.31869.1.S1_at7/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10530OsAffx.31869.5.S1_x_at5/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10530OsAffx.31869.3.S1_s_at2/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10530OsAffx.31869.2.S1_at1/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10540Os.45173.1.S1_x_at4/119+5747548..5753807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10540OsAffx.18229.1.S1_x_at1/119+5747548..5753807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10550OsAffx.19720.2.S1_s_at11/119+5758676..5760466hypothetical protein
LOC_Os09g10550OsAffx.19720.2.S1_at10/119+5758676..5760466hypothetical protein
LOC_Os09g10550OsAffx.19720.1.S1_at6/119+5758676..5760466hypothetical protein
LOC_Os09g10560OsAffx.17635.1.S1_at11/119+5763742..5764152hypothetical protein
LOC_Os09g10570OsAffx.17636.1.S1_at10/119+5764327..5769170hypothetical protein
LOC_Os09g10580OsAffx.29793.1.S1_at11/119+5770360..5771539hypothetical protein
LOC_Os09g10600Os.27167.1.S1_at11/119+5780840..5784946Enoyl, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19720.2.S1_at--877--8592Chr12:10127514..10127881 (25 bp)
TGGGTGAACGACGACATTTTTCTAC
LOC_Os12g17690
OsAffx.19720.2.S1_at--565--7751Chr09:5759440..5759806 (25 bp)
GGTGAACGACGACATTTTTCTACCA
LOC_Os09g10550
OsAffx.19720.2.S1_at--902--7352Chr12:10127511..10127878 (25 bp)
GTGAACGACGACATTTTTCTACCAA
LOC_Os12g17690
OsAffx.19720.2.S1_at--446--8932Chr12:10127510..10127877 (25 bp)
TGAACGACGACATTTTTCTACCAAT
LOC_Os12g17690
OsAffx.19720.2.S1_at--599--5452Chr12:10127509..10127876 (25 bp)
GAACGACGACATTTTTCTACCAATA
LOC_Os12g17690
OsAffx.19720.2.S1_at--1008--10851Chr09:5759395..5759419 (25 bp)
TTGGTATTTAGCTATTCTCAACCCC
LOC_Os09g10550
OsAffx.19720.2.S1_at--213--8571Chr09:5759394..5759418 (25 bp)
TGGTATTTAGCTATTCTCAACCCCC
LOC_Os09g10550
OsAffx.19720.2.S1_at--762--6871Chr09:5759392..5759416 (25 bp)
GTATTTAGCTATTCTCAACCCCCAA
LOC_Os09g10550
OsAffx.19720.2.S1_at--525--10191Chr09:5759391..5759415 (25 bp)
TATTTAGCTATTCTCAACCCCCAAA
LOC_Os09g10550
OsAffx.19720.2.S1_at--26--4291Chr09:5758829..5759338 (25 bp)
CCTCCATATAGCGAAAGATATTGAA
LOC_Os09g10550
OsAffx.19720.2.S1_at--757--3811NONE
CTCCATATAGCGAAAGATATTGAAC
NONE
Target Sequence 
TGGGTGAACGACGACATTTTTCTACCAATAAATAGAGGAAATATTCATTGGTATTTAGCTATTCTCAACCCCCAAAAAAA
AGTGATACATGTACTTGATTCTCTCTGTGAGGACTTCGATCGTGTTGACCTCCATATAGCGAAAGATATTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19720.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis