Browse Element(s) Details


OsAffx.19756.1.S1_at

Description tigr:9640.m01991
TID=OsAffx.19756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2012011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20090NANA12+11676363..11676878hypothetical protein
LOC_Os12g20100OsAffx.7645.1.S1_at11/1112+11683944..11684414hypothetical protein
LOC_Os12g20110NANA12+11687039..11693043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20120OsAffx.19756.1.S1_at11/1112+11700404..11700877hypothetical protein
LOC_Os12g20130OsAffx.19757.1.S1_at8/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_at1/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_x_at1/1112+11705903..11708097hypothetical protein
LOC_Os12g20140OsAffx.7646.1.S1_at11/1112+11711620..11716440hypothetical protein
LOC_Os12g20150Os.15116.1.S1_at11/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
LOC_Os12g20150Os.51568.1.S1_at1/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19756.1.S1_at--185--8991Chr12:11700822..11700846 (25 bp)
TGAACGAATTAACCCCCTTGTCCTG
LOC_Os12g20120
OsAffx.19756.1.S1_at--1093--4951Chr12:11700675..11700699 (25 bp)
GCATGTACACTATCAAGTGGATGGA
LOC_Os12g20120
OsAffx.19756.1.S1_at--67--4311Chr12:11700626..11700650 (25 bp)
CCTTATGAATAGAGTGGACAACAAC
LOC_Os12g20120
OsAffx.19756.1.S1_at--782--1091Chr12:11700614..11700638 (25 bp)
AGTGGACAACAACGAGAAGGAATCC
LOC_Os12g20120
OsAffx.19756.1.S1_at--694--5011Chr12:11700587..11700611 (25 bp)
GCAGGGTACCGTTAATGCTCTGGGC
LOC_Os12g20120
OsAffx.19756.1.S1_at--522--1791Chr12:11700580..11700604 (25 bp)
ACCGTTAATGCTCTGGGCTCTCACA
LOC_Os12g20120
OsAffx.19756.1.S1_at--890--3011Chr12:11700574..11700598 (25 bp)
AATGCTCTGGGCTCTCACACGACAT
LOC_Os12g20120
OsAffx.19756.1.S1_at--854--9671Chr12:11700560..11700584 (25 bp)
TCACACGACATCTGAGGTTTATGGC
LOC_Os12g20120
OsAffx.19756.1.S1_at--733--7871Chr12:11700545..11700569 (25 bp)
GGTTTATGGCAATGCCGGTCACTCT
LOC_Os12g20120
OsAffx.19756.1.S1_at--339--5531Chr12:11700506..11700530 (25 bp)
GAAAACCCGTAAAGACGTCATGCTC
LOC_Os12g20120
OsAffx.19756.1.S1_at--685--651Chr12:11700481..11700505 (25 bp)
ATGAACAACAGCAACGGGAACCGTC
LOC_Os12g20120
Target Sequence 
TGAACGAATTAACCCCCTTGTCCTGGGATCACCTGGATGCTGCTGCTAGAGGGACATTCTTCTCAAGTACAGTCAGATGC
CAACCGATTGAGAAGATGCTCTCAAATATGGGGTGGAGCGAGGAACGACTCCAAACTCGTCAATGCGGCATGTACACTAT
CAAGTGGATGGAAATGCTAGCAGCTCAGTTGGATCTCCTTATGAATAGAGTGGACAACAACGAGAAGGAATCCAAGCAGG
GTACCGTTAATGCTCTGGGCTCTCACACGACATCTGAGGTTTATGGCAATGCCGGTCACTCTGGGACGGATGGTCCGAAA
ACCCGTAAAGACGTCATGCTCATGAACAACAGCAACGGGAACCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis