Browse Element(s) Details


OsAffx.19771.1.S1_at

Description tigr:9640.m02078
TID=OsAffx.19771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2202011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21950OsAffx.19769.1.S1_at11/1112+12357633..12358301hypothetical protein
LOC_Os12g21960OsAffx.19770.1.S1_at7/1112+12358727..12359772hypothetical protein
LOC_Os12g21970NANA12+12361949..12362485Transposable element protein, putative, Retrotrans_gag
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified
LOC_Os12g22000OsAffx.31827.1.S1_at11/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.32278.1.A1_at2/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.13030.1.S1_x_at1/1112+12370570..12373181hypothetical protein
LOC_Os12g22010Os.50949.2.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.2.S1_x_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.52566.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010OsAffx.7653.1.S1_at9/1112+12373402..12379066hypothetical protein
LOC_Os12g22020OsAffx.19771.1.S1_at11/1112+12380541..12386677hypothetical protein
LOC_Os12g22020OsAffx.10906.1.S1_at2/1112+12380541..12386677hypothetical protein
LOC_Os12g22030Os.16318.1.S1_at11/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22030Os.46481.2.S1_x_at1/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22040OsAffx.31828.1.S1_at11/1112+12405281..12406063hypothetical protein
LOC_Os12g22050OsAffx.8201.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.8201.1.S1_x_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.5392.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19771.1.S1_at--574--2773Chr12:12384412..12384436 (25 bp)
AAGACCCATTTTGGCGCATGAAGGA
LOC_Os12g22020
OsAffx.19771.1.S1_at--1071--7751Chr12:12385944..12385968 (25 bp)
GGTGAAACGTTTACCATGCCTCCAG
LOC_Os12g22020
OsAffx.19771.1.S1_at--195--9451Chr12:12385975..12385999 (25 bp)
TCGGCTTGCGTTGTGGTAGGCCAAA
LOC_Os12g22020
OsAffx.19771.1.S1_at--281--6931Chr12:12385990..12386012 (23 bp)
GTAGGCCAAAAGCTTCATTCACATA
LOC_Os12g22020
OsAffx.19771.1.S1_at--984--7811Chr12:12386247..12386271 (25 bp)
GGTCATCCTACAGTGTTTACTTGCG
LOC_Os12g22020
OsAffx.19771.1.S1_at--1094--10691Chr12:12386267..12386291 (25 bp)
TTGCGTGGTCCGTATCTTGTGGAAT
LOC_Os12g22020
OsAffx.19771.1.S1_at--827--7411Chr12:12386303..12386327 (25 bp)
GTGTTGTCTGTCTGTGCTCCAAAAC
LOC_Os12g22020
OsAffx.19771.1.S1_at--96--2231Chr12:12386427..12386451 (25 bp)
ACAAGTCTTGGTTTCTGGGTCCAGT
LOC_Os12g22020
OsAffx.19771.1.S1_at--383--9231Chr12:12386446..12386470 (25 bp)
TCCAGTCCAATCATTCCGTGCAAGG
LOC_Os12g22020
OsAffx.19771.1.S1_at--69--9691Chr12:12386548..12386572 (25 bp)
TCACGTGCATTACCATGACTTGCTC
LOC_Os12g22020
OsAffx.19771.1.S1_at--360--3391Chr12:12386608..12386632 (25 bp)
CAGCTCTGGGCATTCTTGGGTTGAT
LOC_Os12g22020
Target Sequence 
AAGACCCATTTTGGCGCATGAAGGATTGTGAAAAGAAACGCTATTGTCAAATGGTTTTGATGAACCCATTCAGTGGTGAA
ACGTTTACCATGCCTCCAGCACCGCTCGGCTTGCGTTGTGGTAGGCCAAAAGCTTCATTCACATATTGGTCATCCTACAG
TGTTTACTTGCGTGGTCCGTATCTTGTGGAATTTGAAGGGAGGGTGTTGTCTGTCTGTGCTCCAAAACCCTTTGAACCTG
ATGGTGGTGGGAAGTTCTTCGTCGGGGAGTTGACAGTTGGTGAAAACCGAGCTGCTCTAGTGGAGCTGGATGACTCTGAG
CTGAGTAACAAGTCTTGGTTTCTGGGTCCAGTCCAATCATTCCGTGCAAGGATCAAGGGCCATAGAGTTTATAACTTTGC
ATATAAACCACAATGGGATGGAGAAGATATTGAGAAAAATCATCATTATCACGTGCATTACCATGACTTGCTCAAGAAAA
AGTTCAGATATCTCACAGTTGATGAATTCAGCTCTGGGCATTCTTGGGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis