Browse Element(s) Details


OsAffx.19786.1.S1_at

Description tigr:9640.m02245
TID=OsAffx.19786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2362011/11hypothetical protein
LOC_Os03g505703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23610OsAffx.28576.1.S1_s_at11/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.21694.3.S1_x_at11/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.21694.3.S1_at9/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32284.1.S1_x_at4/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32305.1.S1_x_at2/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32283.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32283.1.A1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32282.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.19957.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23620OsAffx.19786.1.S1_at11/1112+13406735..13407264hypothetical protein
LOC_Os12g23630NANA12+13410274..13410561ATP synthase alpha chain, mitochondrial, putative
LOC_Os12g23640NANA12+13417496..13420422retrotransposon protein, putative, unclassified
LOC_Os12g23650NANA12+13421735..13422592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23660OsAffx.1646.1.S1_x_at1/1112+13423367..13426858retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23670Os.50549.1.S1_at4/1112+13428473..13430948expressed protein
LOC_Os12g23670OsAffx.27496.2.S1_x_at1/1112+13428473..13430948expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19786.1.S1_at--189--4553Chr03:28826867..28826891 (25 bp)
GCCCTCGATTATTCCTGATAGAAGG
LOC_Os03g50570
OsAffx.19786.1.S1_at--915--854Chr12:13341431..13341455 (25 bp)
ATGGCGCCCCGGAACGGAAGCATTC
NONE
OsAffx.19786.1.S1_at--788--1933Chr03:28826908..28826932 (25 bp)
ACGGAAGCATTCCATCCAGCAGCAG
LOC_Os03g50570
OsAffx.19786.1.S1_at--216--3651Chr12:13406940..13406964 (25 bp)
CTTCAACCACGCGAGGACCAAGAAT
LOC_Os12g23620
OsAffx.19786.1.S1_at--827--8511Chr12:13406901..13406925 (25 bp)
TGGAAGGCACGGACTCTGCAAGCGT
LOC_Os12g23620
OsAffx.19786.1.S1_at--487--7252Chr12:20478199..20478223 (25 bp)
GTCCCGCACCCTCTGAGAAAGAAAC
NONE
OsAffx.19786.1.S1_at--509--5552Chr12:20478215..20478239 (25 bp)
GAAAGAAACTCCTCAACCATTACAA
NONE
OsAffx.19786.1.S1_at--750--1192Chr12:20478248..20478274 (25 bp)
AGTATGACGCTGTGTCTGACTCTAT
NONE
OsAffx.19786.1.S1_at--662--5692Chr12:20478267..20478291 (25 bp)
GACTCTATTGGTCATAGTTCCTTGC
NONE
OsAffx.19786.1.S1_at--336--272Chr12:20478280..20478304 (25 bp)
ATAGTTCCTTGCTGTTGCGGCCGGT
NONE
OsAffx.19786.1.S1_at--853--4151Chr12:13406765..13406789 (25 bp)
CGCGCGTGTGACTGCCATTCATAAG
LOC_Os12g23620
Target Sequence 
GCCCTCGATTATTCCTGATAGAAGGATCATGGCGCCCCGGAACGGAAGCATTCCATCCAGCAGCAGCATCTCCTTCAACC
ACGCGAGGACCAAGAATGACCTGTGGTGGTATGGAAGGCACGGACTCTGCAAGCGTCCCGCACCCTCTGAGAAAGAAACT
CCTCAACCATTACAAGATAAAGAAGTATGACGCTGTGTCTGACTCTATTGGTCATAGTTCCTTGCTGTTGCGGCCGGTGC
TCGTTTGCGCGCGTGTGACTGCCATTCATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis