Browse Element(s) Details


OsAffx.19810.3.S1_at

Description tigr:9640.m02370
TID=OsAffx.19810.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2487011/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24800Os.50222.1.S1_at11/1112+14230259..14232243nine-cis-epoxycarotenoid dioxygenase4, putative, expressed
LOC_Os12g24810OsAffx.19810.4.S1_s_at11/1112+14239428..14239862hypothetical protein
LOC_Os12g24820NANA12+14241592..14244778hypothetical protein
LOC_Os12g24830OsAffx.22699.1.S1_x_at1/1112+14245156..14248476retrotransposon protein, putative, unclassified
LOC_Os12g24830Os.52731.1.S1_at1/1112+14245156..14248476retrotransposon protein, putative, unclassified
LOC_Os12g24840NANA12+14248691..14250919retrotransposon protein, putative, unclassified
LOC_Os12g24850OsAffx.31867.1.S1_x_at11/1112+14251902..14252111hypothetical protein
LOC_Os12g24859NANA12+14254495..14255190NA
LOC_Os12g24870OsAffx.19810.3.S1_at11/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.2.S1_at5/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.1.S1_x_at3/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.640.1.S1_x_at1/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24880OsAffx.29384.2.S1_at11/1112+14259350..14262852Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g24880OsAffx.29384.1.S1_at2/1112+14259350..14262852Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g24890OsAffx.21465.1.S1_x_at2/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.38172.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.43567.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24900OsAffx.7693.1.S1_x_at11/1112+14279521..14279904hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0010018biological_processfar red light signaling pathway
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19810.3.S1_at--85--1151Chr12:14258147..14258171 (25 bp)
AGTCCTGGCAACAAGCAAGCTAAGG
LOC_Os12g24870
OsAffx.19810.3.S1_at--898--1571Chr12:14258164..14258188 (25 bp)
AGCTAAGGTTCAACGCGTTATGCAG
LOC_Os12g24870
OsAffx.19810.3.S1_at--345--6791Chr12:14258180..14258204 (25 bp)
GTTATGCAGGGCGACGACAAGCCTT
LOC_Os12g24870
OsAffx.19810.3.S1_at--484--6871Chr12:14258317..14258341 (25 bp)
GTATTTTGCCTAGTCAACAAGCCCC
LOC_Os12g24870
OsAffx.19810.3.S1_at--599--2452Chr12:14258332..14258356 (25 bp)
AACAAGCCCCATCAAGTTCAGCTAA
LOC_Os12g24870
OsAffx.19810.3.S1_at--238--6751Chr12:14258347..14258371 (25 bp)
GTTCAGCTAAGAATCCACCAACAAA
LOC_Os12g24870
OsAffx.19810.3.S1_at--124--8451Chr12:14258386..14258410 (25 bp)
GGCCAGCAGAAAAAACTCACAGGAT
LOC_Os12g24870
OsAffx.19810.3.S1_at--481--5912Chr12:14258468..14258492 (25 bp)
GAGCTCATGCTCATATTGCTTTGAT
LOC_Os12g24870
OsAffx.19810.3.S1_at--235--5631Chr12:14258495..14258519 (25 bp)
GACACACAATGTTTCAATATGCCAG
LOC_Os12g24870
OsAffx.19810.3.S1_at--11--6912Chr12:14258519..14258543 (25 bp)
GTATCTCAAGATAGCGAACATGCGA
LOC_Os12g24870
OsAffx.19810.3.S1_at--700--612Chr12:14258538..14258562 (25 bp)
ATGCGAGACGCTCTACTAAACCAAA
LOC_Os12g24870
Target Sequence 
AGTCCTGGCAACAAGCAAGCTAAGGTTCAACGCGTTATGCAGGGCGACGACAAGCCTTGCTTCAGATGCATGTATTAATG
AGGAAAAATACTTGATTGTTTCGGCTGGGATTCAGAACCTACAAACAATGGTTGCAACACCACACACTGTTGAGACACAA
CATCAGCAAGGTATTTTGCCTAGTCAACAAGCCCCATCAAGTTCAGCTAAGAATCCACCAACAAAGAAAAGAACAGGGAG
GCCAGCAGAAAAAACTCACAGGATGAAGCCAATAGGGGAACAAATAACTGAAAGCAGCAAGAAGAGGAGGACAAAAAAGA
AGAGCTCATGCTCATATTGCTTTGATGAGACACACAATGTTTCAATATGCCAGTATCTCAAGATAGCGAACATGCGAGAC
GCTCTACTAAACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19810.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis