Browse Element(s) Details


OsAffx.19876.1.S1_x_at

Description tigr:9640.m02772
TID=OsAffx.19876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2879011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28760OsAffx.19874.1.S1_at11/1112+16993285..16993791hypothetical protein
LOC_Os12g28770Os.7253.1.S1_at11/1112+17003337..17005898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g28780OsAffx.19875.1.S1_x_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28780OsAffx.19875.1.S1_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28790OsAffx.19876.1.S1_x_at11/1112+17015285..17016043hypothetical protein
LOC_Os12g28800OsAffx.25936.1.S1_s_at9/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.7.S1_s_at8/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.2.S1_x_at4/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.5.S1_x_at2/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28810Os.10827.1.S1_x_at11/1112+17025151..17029849transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28810Os.46055.2.S1_x_at5/1112+17025151..17029849transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28820OsAffx.19877.1.S1_at11/1112+17032066..17032857hypothetical protein
LOC_Os12g28830OsAffx.21171.4.S1_x_at3/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.20729.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.10158.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.5.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.4.S1_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19876.1.S1_x_at--412--4551Chr12:17015763..17015787 (25 bp)
GCGCCATGGAGCACGCCGCTTCCGT
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--250--4051Chr12:17015856..17015880 (25 bp)
CGATGGAGGCAGACTATGAGCGTCT
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--941--8551Chr12:17015859..17015883 (25 bp)
TGGAGGCAGACTATGAGCGTCTGCT
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--200--8491Chr12:17015925..17015949 (25 bp)
TGGCGGCCCTGGAGGAAATTCCACA
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--993--8551Chr12:17015934..17015958 (25 bp)
TGGAGGAAATTCCACAGCTGCCGCG
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--837--6171Chr12:17015936..17015960 (25 bp)
GAGGAAATTCCACAGCTGCCGCGTG
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--850--4771Chr12:17015950..17015974 (25 bp)
GCTGCCGCGTGCCACCGAAGAAGAA
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--955--1431Chr12:17015968..17015992 (25 bp)
AGAAGAAGACCAGCTAACGCTCGAA
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--575--1451Chr12:17015971..17015995 (25 bp)
AGAAGACCAGCTAACGCTCGAAGCT
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--15--1711Chr12:17015976..17016000 (25 bp)
ACCAGCTAACGCTCGAAGCTGCTGG
LOC_Os12g28790
OsAffx.19876.1.S1_x_at--60--4811Chr12:17015986..17016010 (25 bp)
GCTCGAAGCTGCTGGCCGCTTCTGT
LOC_Os12g28790
Target Sequence 
GCGCCATGGAGCACGCCGCTTCCGTGGCGCGCCTGGTCGAGCTCCTCGGCCATGGGCAGGGGGCGGAGGCGGCTCTGGAG
GCGGCCATGGAGGCGATGGAGGCAGACTATGAGCGTCTGCTGCAGCAGCGCGACGCCGCCGAGGCGTCGGAGCTCGCGGA
GATGGCGGCCCTGGAGGAAATTCCACAGCTGCCGCGTGCCACCGAAGAAGAAGACCAGCTAACGCTCGAAGCTGCTGGCC
GCTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19876.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis