Browse Element(s) Details


OsAffx.19893.1.S1_at

Description tigr:9640.m02906
TID=OsAffx.19893.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to mla-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3008011/11NB-ARC domain containing protein
LOC_Os06g476201/11IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30050Os.14919.1.S1_at1/1112+17965760..17971656transposon protein, putative, Mutator sub-class
LOC_Os12g30050OsAffx.29313.1.S1_at1/1112+17965760..17971656transposon protein, putative, Mutator sub-class
LOC_Os12g30060Os.49004.1.S1_at11/1112+17973613..17976523KE2 family protein, expressed
LOC_Os12g30070OsAffx.31938.1.S1_at10/1112+17978520..17981689disease resistance protein RPM1 homolog, putative
LOC_Os12g30080OsAffx.19893.1.S1_at11/1112+17984533..17987203NB-ARC domain containing protein
LOC_Os12g30089NANA12+17992527..17993561NA
LOC_Os12g30100Os.24831.2.S1_at3/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30100Os.45977.1.S1_at1/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30110OsAffx.31939.1.S1_at9/1112+18008626..18010392hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009850biological_processauxin metabolism
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19893.1.S1_at--1162--3111Chr12:17985103..17985127 (25 bp)
AATTATCGAGCTTGCATTATTAAAC
LOC_Os12g30080
OsAffx.19893.1.S1_at--808--31Chr12:17985074..17985098 (25 bp)
ATTGTGGCAGCAGAATAATCACTAC
LOC_Os12g30080
OsAffx.19893.1.S1_at--1146--5211Chr12:17985062..17985086 (25 bp)
GAATAATCACTACAACACGAAGCGT
LOC_Os12g30080
OsAffx.19893.1.S1_at--605--4111Chr12:17985045..17985069 (25 bp)
CGAAGCGTTACAGTTGCATCATGTT
LOC_Os12g30080
OsAffx.19893.1.S1_at--612--3491Chr12:17985026..17985050 (25 bp)
CATGTTGTTCTTCTCAAGTTGGTTA
LOC_Os12g30080
OsAffx.19893.1.S1_at--501--3311Chr12:17984924..17984948 (25 bp)
CACATTATCCTCATCCAGAAAATAT
LOC_Os12g30080
OsAffx.19893.1.S1_at--264--6631Chr12:17984783..17984807 (25 bp)
GTTGTGGACTTGCAAATGATCCTAA
LOC_Os12g30080
OsAffx.19893.1.S1_at--135--6891Chr12:17984676..17984700 (25 bp)
GTATTTCCAGAAGATCGTAAGATTA
LOC_Os12g30080
OsAffx.19893.1.S1_at--418--9751Chr12:17984653..17984677 (25 bp)
TAAGAAACGGCATTTGGTTAGCAAA
LOC_Os12g30080
OsAffx.19893.1.S1_at--700--5311Chr12:17984619..17984643 (25 bp)
GAAGGATTCATTCATAGACACATAA
LOC_Os12g30080
OsAffx.19893.1.S1_at--454--10296Chr01:12971675..12971696 (22 bp)
TTTGCCACTCTTACAAATGGTGCTT
NONE
Target Sequence 
AATTATCGAGCTTGCATTATTAAACAATAATTGTGGCAGCAGAATAATCACTACAACACGAAGCGTTACAGTTGCATCAT
GTTGTTCTTCTCAAGTTGGTTATATTTATGAGATGAAGCCTCTTAGTTTCAATGAATCCAAATGGTTATTTTTGAAAAGA
ACATTTGATTATGAAAATTCACATTATCCTCATCCAGAAAATATTTTGGATAAGATATTACGAAAATATGGTGGCCTACC
ATTGGCAATCATTACTATATCTAGCTTGTTATTAGATCAGCATGAAATTGATGAATGGCATAGGGTACTTAATACTATTG
GTTGTGGACTTGCAAATGATCCTAATGCAGAGACAATGTCAAATATATTATCACTGAGTTTCTTCAATCTCCCTCACTAT
CTAAAAACTTGCTTCATGTACCTGAGTGTATTTCCAGAAGATCGTAAGATTAAGAAACGGCATTTGGTTAGCAAATGGAT
TGCTGAAGGATTCATTCATAGACACATAAAGGTGCAACTTTTGGAGGGGCTTTTAACTATTTGCCACTCTTACAAATGGT
GCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis