Browse Element(s) Details


OsAffx.19962.1.S1_at

Description tigr:9640.m03308
TID=OsAffx.19962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3427011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34220OsAffx.32002.1.S1_at1/1112+20715860..20717311F-box domain containing protein
LOC_Os12g34220Os.50509.1.S1_at1/1112+20715860..20717311F-box domain containing protein
LOC_Os12g34230NANA12+20720401..20721200hypothetical protein
LOC_Os12g34240NANA12+20723393..20727139F-box domain containing protein
LOC_Os12g34250NANA12+20729859..20733108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g34260Os.47463.1.S1_x_at2/1112+20735503..20739817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g34270OsAffx.19962.1.S1_at11/1112+20741638..20744077F-box domain containing protein
LOC_Os12g34280NANA12+20746083..20746765hypothetical protein
LOC_Os12g34290OsAffx.32015.1.S1_at11/1112+20750484..20753888F-box domain containing protein
LOC_Os12g34300Os.47885.1.A1_at11/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_x_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34310OsAffx.19963.1.S1_at11/1112+20762595..20765232F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19962.1.S1_at--638--1991Chr12:20742669..20742691 (23 bp)
ACTCCTTGTGCCATTGGGCGAGGAT
LOC_Os12g34270
OsAffx.19962.1.S1_at--647--3351Chr12:20743408..20743432 (25 bp)
CAGAATTTCCCAATGTTACCGAGTT
LOC_Os12g34270
OsAffx.19962.1.S1_at--958--2531Chr12:20743439..20743463 (25 bp)
AACTGCACAAGTGTCCATACCTACA
LOC_Os12g34270
OsAffx.19962.1.S1_at--586--5051Chr12:20743507..20743531 (25 bp)
GCAGAATCGAGTACCTCTCCATTGA
LOC_Os12g34270
OsAffx.19962.1.S1_at--950--7731Chr12:20743691..20743715 (25 bp)
GGTGGTGATTCACATCCTGGCTGCA
LOC_Os12g34270
OsAffx.19962.1.S1_at--162--671Chr12:20743745..20743769 (25 bp)
ATGAATCTCTCACTAGATCACCTTC
LOC_Os12g34270
OsAffx.19962.1.S1_at--1011--10031Chr12:20743776..20743800 (25 bp)
TAGATATCCATCACTTTCGACCTTC
LOC_Os12g34270
OsAffx.19962.1.S1_at--562--10791Chr12:20743818..20743842 (25 bp)
TTGTATCTCTACTCCTTGCGAATGC
LOC_Os12g34270
OsAffx.19962.1.S1_at--705--9151Chr12:20743834..20743858 (25 bp)
TGCGAATGCGTCGTCACTGCAAAGA
LOC_Os12g34270
OsAffx.19962.1.S1_at--304--251Chr12:20743921..20743945 (25 bp)
ATATCTGCACATTCCATGCTATGGG
LOC_Os12g34270
OsAffx.19962.1.S1_at--128--1371Chr12:20743986..20744010 (25 bp)
AGAGCAAGTTCCGTAGCGCTACCAA
LOC_Os12g34270
Target Sequence 
ACTCCTTGTGCCATTGGGCGAGGATCTGATGAATGATATACCAGAATTTCCCAATGTTACCGAGTTGAGAATAACTGCAC
AAGTGTCCATACCTACACACACTATTGGAGCAAGCATAGCCAAGTTCGTCGCGAAGTGCAGCAGAATCGAGTACCTCTCC
ATTGACATCAACAAACAGGGTGGTGATTCACATCCTGGCTGCAAATGTGAAGAACCTAAAGATTGGAAGGACATGAATCT
CTCACTAGATCACCTTCGAAGTATAGATATCCATCACTTTCGACCTTCCCAAGACCAAATGCAGCTTGTATCTCTACTCC
TTGCGAATGCGTCGTCACTGCAAAGAATGACCATTGCACTACATAAGCGATATGTAGAGGCAATGGAGCGAGAAGATGGC
AAGGAGGTATATCTGCACATTCCATGCTATGGGGGACATTGGACCCCTTGTGCTTGGGGGAGCTCTAGTCGTCAGAGCAA
GTTCCGTAGCGCTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis