Browse Element(s) Details


OsAffx.20039.1.S1_at

Description tigr:9640.m03895
TID=OsAffx.20039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3987011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39830Os.51953.1.S1_at11/1112+24585973..24588513Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g39840Os.15671.1.A1_at11/1112+24594281..24597403expressed protein
LOC_Os12g39850OsAffx.32104.1.S1_at11/1112+24598941..24600230Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g39860Os.5685.1.S1_at9/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39860OsAffx.26820.1.S1_at1/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39870OsAffx.20039.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39870OsAffx.32105.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39880Os.49916.1.S1_at11/1112+24612885..24615723expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_x_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.1.S1_at9/1112+24616310..24619047expressed protein
LOC_Os12g39900OsAffx.1319.1.S1_at1/1112+24619342..24622359transposon protein, putative, Mariner sub-class
LOC_Os12g39910OsAffx.20040.1.S1_x_at11/1112+24623929..24624704hypothetical protein
LOC_Os12g39920OsAffx.32107.1.S1_at7/1112+24636234..24638070expressed protein
LOC_Os12g39920Os.11758.1.S1_at1/1112+24636234..24638070expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20039.1.S1_at--479--5611Chr12:24611271..24611291 (21 bp)
GACAAGTCTGGAACGCATGGAAATG
LOC_Os12g39870
OsAffx.20039.1.S1_at--445--1151Chr12:24611271..24611295 (25 bp)
AGTCTGGAACGCATGGAAATGTTGA
LOC_Os12g39870
OsAffx.20039.1.S1_at--819--3911Chr12:24611274..24611298 (25 bp)
CTGGAACGCATGGAAATGTTGAGAC
LOC_Os12g39870
OsAffx.20039.1.S1_at--957--2591Chr12:24611278..24611302 (25 bp)
AACGCATGGAAATGTTGAGACAGGA
LOC_Os12g39870
OsAffx.20039.1.S1_at--800--2411Chr12:24611309..24611333 (25 bp)
AAAACAAGAGTTTGCAATGCTAGAC
LOC_Os12g39870
OsAffx.20039.1.S1_at--292--3231Chr12:24611313..24611337 (25 bp)
CAAGAGTTTGCAATGCTAGACAGCA
LOC_Os12g39870
OsAffx.20039.1.S1_at--785--6071Chr12:24611316..24611340 (25 bp)
GAGTTTGCAATGCTAGACAGCATAG
LOC_Os12g39870
OsAffx.20039.1.S1_at--7--4871Chr12:24611327..24611351 (25 bp)
GCTAGACAGCATAGATTGGTAGCTT
LOC_Os12g39870
OsAffx.20039.1.S1_at--890--4951Chr12:24611335..24611359 (25 bp)
GCATAGATTGGTAGCTTATGGCAAC
LOC_Os12g39870
OsAffx.20039.1.S1_at--703--31Chr12:24611341..24611365 (25 bp)
ATTGGTAGCTTATGGCAACGGATCC
LOC_Os12g39870
OsAffx.20039.1.S1_at--856--7831Chr12:24611344..24611368 (25 bp)
GGTAGCTTATGGCAACGGATCCAAT
LOC_Os12g39870
Target Sequence 
GACAAGTCTGGAACGCATGGAAATGTTGAGACAGGAGAGGGAAAAACAAGAGTTTGCAATGCTAGACAGCATAGATTGGT
AGCTTATGGCAACGGATCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis