Browse Element(s) Details


OsAffx.20087.1.S1_at

Description tigr:9640.m04149
TID=OsAffx.20087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4224011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42200NANA12+26139379..26145397cation/hydrogen exchanger, putative, expressed
LOC_Os12g42210Os.52551.1.S1_at6/1112+26146557..26151053Protease Do-like 5, chloroplast precursor, putative, expressed
LOC_Os12g42220Os.52955.1.A1_at11/1112+26160950..26162375expressed protein
LOC_Os12g42230Os.15571.1.S1_at10/1112+26166584..26169873Pyruvate dehydrogenase E1 component beta subunit, putative, expressed
LOC_Os12g42240OsAffx.20087.1.S1_at11/1112+26170159..26170515hypothetical protein
LOC_Os12g42250OsAffx.7862.1.S1_s_at11/1112+26177205..26178290expressed protein
LOC_Os12g42260Os.47335.2.S1_at10/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed
LOC_Os12g42260Os.47335.1.S1_at9/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed
LOC_Os12g42270Os.35344.18.S1_x_at11/1112+26189112..26195160transposon protein, putative, Mutator sub-class
LOC_Os12g42270Os.35344.3.S1_x_at9/1112+26189112..26195160transposon protein, putative, Mutator sub-class
LOC_Os12g42270OsAffx.22940.5.S1_x_at3/1112+26189112..26195160transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20087.1.S1_at--432--9111Chr12:26170200..26170224 (25 bp)
TGCTGCATATCCCATCCATGGCCAT
LOC_Os12g42240
OsAffx.20087.1.S1_at--637--8451Chr12:26170218..26170242 (25 bp)
TGGCCATGAGGCCATGATCACAATT
LOC_Os12g42240
OsAffx.20087.1.S1_at--869--6431Chr12:26170233..26170257 (25 bp)
GATCACAATTCACAGGCCTACAGGA
LOC_Os12g42240
OsAffx.20087.1.S1_at--460--1311Chr12:26170258..26170282 (25 bp)
AGATGTAGGGAGCAGCTTCCCTCTG
LOC_Os12g42240
OsAffx.20087.1.S1_at--111--10091Chr12:26170263..26170287 (25 bp)
TAGGGAGCAGCTTCCCTCTGTTGGA
LOC_Os12g42240
OsAffx.20087.1.S1_at--928--5651Chr12:26170342..26170366 (25 bp)
GACAGGGCAAAGATCTCATGCAGAT
LOC_Os12g42240
OsAffx.20087.1.S1_at--383--6331Chr12:26170364..26170388 (25 bp)
GATGCAGAGATATGCCTGCCCAGCT
LOC_Os12g42240
OsAffx.20087.1.S1_at--7--271Chr12:26170373..26170397 (25 bp)
ATATGCCTGCCCAGCTGATGCTGAT
LOC_Os12g42240
OsAffx.20087.1.S1_at--1012--8851Chr12:26170400..26170424 (25 bp)
TGATGCTGCTAATGGCCATGGCGTC
LOC_Os12g42240
OsAffx.20087.1.S1_at--43--8451Chr12:26170413..26170437 (25 bp)
GGCCATGGCGTCAAATGGACATGAA
LOC_Os12g42240
OsAffx.20087.1.S1_at--243--8991Chr12:26170434..26170458 (25 bp)
TGAAGGGTTCACTCATGAGGAAGAA
LOC_Os12g42240
Target Sequence 
TGCTGCATATCCCATCCATGGCCATGAGGCCATGATCACAATTCACAGGCCTACAGGAAGATGTAGGGAGCAGCTTCCCT
CTGTTGGAGATGATGGGCATCAGTGGGGCAGTAGTAGTTCCTGGCGACAGGAGGCAGTGGAGGACAGGGCAAAGATCTCA
TGCAGATGCAGAGATATGCCTGCCCAGCTGATGCTGATGCTGATGCTGCTAATGGCCATGGCGTCAAATGGACATGAAGG
GTTCACTCATGAGGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis