Browse Element(s) Details


OsAffx.20169.1.S1_at

Description gb:NM_197534.1
DB_XREF= gi:37536427
TID=OsAffx.20169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBb0060I05.8), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3907011/11retrotransposon protein, putative, LINE subclass
LOC_Os09g324908/11retrotransposon protein, putative, LINE subclass
LOC_Os07g331305/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39030Os.17301.1.S1_at11/1110+20472065..20476769Associated with HOX family protein, expressed
LOC_Os10g39044NANA10+20482695..20484015hypothetical protein
LOC_Os10g39060OsAffx.30717.1.S1_at11/1110+20493681..20494537hypothetical protein
LOC_Os10g39070OsAffx.20169.1.S1_at11/1110+20495449..20497585retrotransposon protein, putative, LINE subclass
LOC_Os10g39080Os.56717.1.S1_at3/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39080OsAffx.30486.1.S1_at1/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39084OsAffx.7944.1.S1_x_at8/1110+20503845..20504176hypothetical protein
LOC_Os10g39090Os.55991.1.S1_s_at11/1110+20507751..20509331expressed protein
LOC_Os10g39090Os.55991.1.S1_at11/1110+20507751..20509331expressed protein
LOC_Os10g39100Os.46418.1.S1_at11/1110+20513152..20515234Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g39110OsAffx.18574.1.S1_x_at11/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39110OsAffx.22609.1.S1_x_at1/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39120Os.9019.1.S1_at11/1110+20518225..20521635Ubiquitin-conjugating enzyme E2 I, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20169.1.S1_at--102--4996Chr12:27225229..27225248 (20 bp)
GCATCCGATGGAACCTCACAGCAAA
NONE
OsAffx.20169.1.S1_at--896--6994Chr07:19784578..19784602 (25 bp)
GTACTCGGCAAAATCGGCCTATCGA
LOC_Os07g33130
OsAffx.20169.1.S1_at--499--8434Chr07:19784593..19784617 (25 bp)
GGCCTATCGACTACAATTCCTTGGG
LOC_Os07g33130
OsAffx.20169.1.S1_at--304--9213Chr07:19784620..19784644 (25 bp)
TGCCAAATCTACCTTCTATCAGTCA
LOC_Os07g33130
OsAffx.20169.1.S1_at--260--5335Chr07:19784668..19784692 (25 bp)
GAAGTGCAAGTTCTTCTCTTGGCTG
LOC_Os07g33130
OsAffx.20169.1.S1_at--204--10591Chr10:20495877..20495901 (25 bp)
TTCTCTTGGCTGGTCACGCAAAATA
LOC_Os10g39070
OsAffx.20169.1.S1_at--163--6533Chr10:20495803..20495827 (25 bp)
GATTTGCCCACTTTGTTATAATGTT
LOC_Os10g39070
OsAffx.20169.1.S1_at--632--732Chr10:20495783..20495807 (25 bp)
ATGTTGATGAATCGGCCCTGCTTCT
LOC_Os10g39070
OsAffx.20169.1.S1_at--1032--6232Chr10:20495711..20495735 (25 bp)
GATGGACTGGGACTGACCTTCAGAT
LOC_Os10g39070
OsAffx.20169.1.S1_at--499--5553Chr10:20495676..20495700 (25 bp)
GAAAGCTGTCACTCAGTCGAGCAAT
LOC_Os10g39070
OsAffx.20169.1.S1_at--788--9954Chr10:20495530..20495554 (25 bp)
TACGCCATCCTCAATTCTAGCAAAG
LOC_Os10g39070
Target Sequence 
GCATCCGATGGAACCTCACAGCAAATGGGCAGTACTCGGCAAAATCGGCCTATCGACTACAATTCCTTGGGGCTGCCAAA
TCTACCTTCTATCAGTCAATCTGGAAGGCATGGGCGCCGCCGAAGTGCAAGTTCTTCTCTTGGCTGGTCACGCAAAATAG
AGTATGGACGGCAGACAGGCTGGAAAAAAGAGGATGGCAAAACCAAAAGATTTGCCCACTTTGTTATAATGTTGATGAAT
CGGCCCTGCTTCTCCTGGCCAAATGCAAACTCACAAAGAGGATATGGGCAGAAATGCAGAGATGGACTGGGACTGACCTT
CAGATGGACAACTCGGAAAGCTGTCACTCAGTCGAGCAATGGTGGACACTCGTAACGGAATCTCCAAACACCCCATGCAA
GCCTCTCAGGACCCTGGTGATTTTAATCTCGTGGGAAATCTGGTGCGAAAGAAACGCAAGAATCTTCCGCAACAATGCAT
CTACGCCATCCTCAATTCTAGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis