Browse Element(s) Details


OsAffx.20261.1.S1_at

Description gb:NM_196930.1
DB_XREF= gi:37535219
TID=OsAffx.20261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0006L06.15), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3295011/11retrotransposon protein, putative, LINE subclass
LOC_Os03g529501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32900Os.3195.2.S1_x_at11/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32900Os.52047.1.S1_x_at1/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32970Os.415.1.S1_at10/1110+16928803..16932188Eukaryotic translation initiation factor 4E-2, putative, expressed
LOC_Os10g32980Os.3206.1.S1_at11/1110+16932660..16937186Cellulose synthase A catalytic subunit 4, putative, expressed
LOC_Os10g32990Os.46117.1.S1_at10/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.8923.1.A1_at2/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990OsAffx.30096.1.S1_x_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.10728.1.S1_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20261.1.S1_at--735--3371Chr10:16918990..16919014 (25 bp)
CAGCGAGTTTGCAGACCGATCAAGT
LOC_Os10g32950
OsAffx.20261.1.S1_at--182--7571Chr10:16919054..16919078 (25 bp)
GGGCCCTCCATTTACGATGGCTGTG
LOC_Os10g32950
OsAffx.20261.1.S1_at--1034--4691Chr10:16919073..16919097 (25 bp)
GCTGTGGTACGAATGGACCTTCCCA
LOC_Os10g32950
OsAffx.20261.1.S1_at--573--5811Chr10:16919088..16919112 (25 bp)
GACCTTCCCAGACAAACCGTGGATT
LOC_Os10g32950
OsAffx.20261.1.S1_at--1008--7911Chr10:16919108..16919132 (25 bp)
GGATTGGTATGCCAACCCCATGTGA
LOC_Os10g32950
OsAffx.20261.1.S1_at--812--7371Chr10:16919129..16919153 (25 bp)
GTGACGAACAGGACGCCGAGCTCTT
LOC_Os10g32950
OsAffx.20261.1.S1_at--574--9551Chr10:16919150..16919174 (25 bp)
TCTTTGCAGCATCCACAACGGTGAC
LOC_Os10g32950
OsAffx.20261.1.S1_at--979--932Chr10:16919188..16919212 (25 bp)
AGGAAGGCGCTCTTCTGGGAATCCC
LOC_Os10g32950
OsAffx.20261.1.S1_at--80--8631Chr10:16919203..16919227 (25 bp)
TGGGAATCCCCTTGGGTATCCAGCT
LOC_Os10g32950
OsAffx.20261.1.S1_at--520--2371Chr10:16919250..16919274 (25 bp)
AAACCTCTACCGTCATGCTAGAAGG
LOC_Os10g32950
OsAffx.20261.1.S1_at--540--3191Chr10:16919345..16919369 (25 bp)
CAATGCTCGTCACGGAGTTCTTCAA
LOC_Os10g32950
Target Sequence 
CAGCGAGTTTGCAGACCGATCAAGTATGGTGGCCTGGGGGTCTCGAACCTCACCAAGATGGGACGGGCCCTCCATTTACG
ATGGCTGTGGTACGAATGGACCTTCCCAGACAAACCGTGGATTGGTATGCCAACCCCATGTGACGAACAGGACGCCGAGC
TCTTTGCAGCATCCACAACGGTGACCATCGGGGACAGCAGGAAGGCGCTCTTCTGGGAATCCCCTTGGGTATCCAGCTCC
CCACTAAAGACAATGGCACCAAACCTCTACCGTCATGCTAGAAGGAAGAAAAGGACTGTTGCAAATGCCCTACAGGACAA
TAAGTGGATCAATGACATCAGACACAACTTGACATCAATGCTCGTCACGGAGTTCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis