Browse Element(s) Details

OsAffx.20369.1.S1_at

Description

gb:NM_196372.1
DB_XREF= gi:37534103
TID=OsAffx.20369.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0050N08.13), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g26030	11/11	retrotransposon protein, putative, unclassified
LOC_Os02g05260	7/11	retrotransposon protein, putative, unclassified
LOC_Os03g47410	6/11	retrotransposon protein, putative, unclassified
LOC_Os04g06940	5/11	retrotransposon protein, putative, unclassified, expressed
LOC_Os04g26970	2/11	retrotransposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g25950	Os.46333.1.S1_x_at	3/11	10	+	13117793..13119521	Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25950	Os.46333.1.S1_at	1/11	10	+	13117793..13119521	Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25960	OsAffx.10637.1.S1_s_at	11/11	10	+	13120714..13124400	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960	OsAffx.10637.3.S1_s_at	9/11	10	+	13120714..13124400	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960	OsAffx.10637.4.S1_s_at	7/11	10	+	13120714..13124400	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980	OsAffx.32056.1.S1_at	11/11	10	+	13125906..13130378	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980	OsAffx.32056.1.S1_x_at	10/11	10	+	13125906..13130378	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980	OsAffx.30536.1.S1_x_at	1/11	10	+	13125906..13130378	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25990	OsAffx.20370.1.S1_at	11/11	10	+	13131377..13132303	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g26000	OsAffx.8150.1.S1_at	11/11	10	+	13132783..13133229	hypothetical protein
LOC_Os10g26010	Os.46333.1.S1_at	11/11	10	+	13136168..13137937	Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26010	Os.46333.1.S1_x_at	11/11	10	+	13136168..13137937	Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26020	NA	NA	10	+	13141522..13141989	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26030	OsAffx.20369.1.S1_at	11/11	10	+	13142778..13146554	retrotransposon protein, putative, unclassified
LOC_Os10g26040	Os.46012.2.S1_x_at	9/11	10	+	13152703..13158814	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040	Os.46012.3.S1_x_at	6/11	10	+	13152703..13158814	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040	Os.27088.1.A1_x_at	3/11	10	+	13152703..13158814	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040	Os.45902.1.A1_x_at	2/11	10	+	13152703..13158814	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040	OsAffx.22094.1.S1_at	1/11	10	+	13152703..13158814	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26050	Os.26721.1.S1_at	11/11	10	+	13161357..13165343	methionyl-tRNA synthetase, putative, expressed
LOC_Os10g26060	Os.12807.1.S1_x_at	11/11	10	+	13165843..13167972	Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060	Os.12807.2.S1_x_at	11/11	10	+	13165843..13167972	Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060	Os.22346.2.S1_x_at	2/11	10	+	13165843..13167972	Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060	OsAffx.27508.71.S1_s_at	2/11	10	+	13165843..13167972	Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26070	OsAffx.20368.1.S1_at	11/11	10	+	13170422..13172377	pentatricopeptide, putative

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.20369.1.S1_at--46--271	3	Chr10:13145596..13146004 (25 bp)	AAGCAGTCTACACTAGAGGCGTGGT	LOC_Os10g26030
OsAffx.20369.1.S1_at--395--213	1	Chr10:13146027..13146051 (25 bp)	ACAGTGATGCACTTCAAGGCGGTGA	LOC_Os10g26030
OsAffx.20369.1.S1_at--1150--325	4	Chr10:13146083..13146107 (25 bp)	CAACTGTGGACTCATGTTTTCTGGA	LOC_Os10g26030
OsAffx.20369.1.S1_at--275--127	3	Chr10:13146140..13146164 (25 bp)	AGATAGTGATCTGGCCGGCGACAGT	LOC_Os10g26030
OsAffx.20369.1.S1_at--815--71	4	Chr10:13146166..13146190 (25 bp)	ATGATCGTCGGAGTACTAGCGGCAT	LOC_Os10g26030
OsAffx.20369.1.S1_at--1141--499	4	Chr10:13146187..13146211 (25 bp)	GCATGGCGTTTTACTTCAACAGCAG	LOC_Os10g26030
OsAffx.20369.1.S1_at--265--249	1	Chr10:13146204..13146228 (25 bp)	AACAGCAGTTTGGTCTCGTGGAGTT	LOC_Os10g26030
OsAffx.20369.1.S1_at--282--241	4	Chr10:13146241..13146265 (25 bp)	AAACAGTGGCACTTTCGTCCTGTGA	LOC_Os10g26030
OsAffx.20369.1.S1_at--188--825	2	Chr10:13146278..13146302 (25 bp)	GGCAGCCACTGCAGCAGCTTGTCAA	LOC_Os10g26030
OsAffx.20369.1.S1_at--113--155	1	Chr10:13146293..13146317 (25 bp)	AGCTTGTCAAGCTTTGTGGCTCAGG	LOC_Os10g26030
OsAffx.20369.1.S1_at--507--903	5	Chr10:13146389..13146413 (25 bp)	TGCACTCATGAAGAACCCTGTGTTT	LOC_Os10g26030

Target Sequence

AAGCAGTCTACACTAGAGGCGTGGTGAGCAAATTCATGGAACAACTGACAGTGATGCACTTCAAGGCGGTGAAGCAAATT
CTCAGATATCTCAAGGGGACAATCAACTGTGGACTCATGTTTTCTGGAGGCAATGATGCAGTGGAGATTACTGGTTTCAC
AGATAGTGATCTGGCCGGCGACAGTGATGATCGTCGGAGTACTAGCGGCATGGCGTTTTACTTCAACAGCAGTTTGGTCT
CGTGGAGTTCACAAAAGCAGAAAACAGTGGCACTTTCGTCCTGTGAGGCTGAGTTCATGGCAGCCACTGCAGCAGCTTGT
CAAGCTTTGTGGCTCAGGGGATTGTTGATTGAGATGATTGGTGCAGAAGCCAGGCCGGTGAAGCTGTATGTTGATAACAA
GTCAGCAATTGCACTCATGAAGAACCCTGTGTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis